Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EHF33_RS07085 Genome accession   NZ_CP034183
Coordinates   1449377..1450543 (-) Length   388 a.a.
NCBI ID   WP_164473435.1    Uniprot ID   -
Organism   Deinococcus psychrotolerans strain S14-83     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444377..1455543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF33_RS21430 (EHF33_07070) rplS 1445876..1446340 (+) 465 Protein_1416 50S ribosomal protein L19 -
  EHF33_RS07075 (EHF33_07075) - 1446642..1447628 (+) 987 WP_124869322.1 malate dehydrogenase -
  EHF33_RS07080 (EHF33_07080) - 1447730..1449307 (+) 1578 WP_124869324.1 serine hydrolase -
  EHF33_RS07085 (EHF33_07085) pilD 1449377..1450543 (-) 1167 WP_164473435.1 prepilin peptidase Machinery gene
  EHF33_RS07090 (EHF33_07090) - 1450800..1453754 (-) 2955 WP_124869327.1 DUF11 domain-containing protein -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 40217.32 Da        Isoelectric Point: 6.4554

>NTDB_id=329720 EHF33_RS07085 WP_164473435.1 1449377..1450543(-) (pilD) [Deinococcus psychrotolerans strain S14-83]
MNLDVYTVAVLFVLGLLIGSFSNVLIWRLPRGENVAFPPSHCPNCNHQLGPQDLVPVVSWAMLGGKCRYCKAPISARYPV
IELISGAGYAALALLFPISSFGAGVIGLCLLFTILLVASIIDFETYTIPDELTIPGTAIGLIFGAVNGAALSPLPNFEAA
LRGALMGAGVLVVISLLGGWVLRRFRERLYPEVPIGYQQIALALFGGVLFGGVWGSWWAALAGGAALGVISTVINAAARR
AVRVPELLTLGGSLLALAFFSARGSLSLLTGIQGGLAAAGALSLLAGAYWWLSSSNATAEDDDSPSDPTAMGFGDVKLAA
VIGAFLGFERLLVALAVAVVAGAVLGLIQRFTGGENKLKFGPYLAIGAVVALLWGAAIIEAYQGYLGL

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=329720 EHF33_RS07085 WP_164473435.1 1449377..1450543(-) (pilD) [Deinococcus psychrotolerans strain S14-83]
GTGAATCTGGATGTGTATACCGTCGCCGTGTTGTTCGTCTTGGGCCTGCTGATCGGCTCATTTTCCAACGTGCTGATCTG
GCGCTTGCCCAGAGGCGAAAACGTGGCTTTTCCGCCGAGCCACTGCCCCAACTGTAACCACCAGCTCGGGCCGCAAGATC
TGGTGCCGGTGGTGTCGTGGGCCATGCTGGGCGGCAAGTGCCGCTACTGCAAAGCGCCGATCAGTGCCCGCTATCCGGTG
ATTGAACTCATCAGCGGTGCGGGGTACGCGGCACTGGCCCTGCTGTTTCCGATCAGCAGCTTCGGCGCGGGCGTTATCGG
ACTGTGCTTGCTGTTTACCATTTTGCTGGTCGCTTCCATCATTGACTTCGAAACCTACACCATCCCCGACGAGCTGACCA
TTCCCGGCACCGCCATCGGCCTGATTTTTGGCGCGGTCAACGGCGCGGCCCTCTCGCCGCTGCCCAATTTCGAAGCGGCC
CTGCGCGGAGCATTGATGGGCGCAGGCGTGTTGGTTGTCATCAGCTTACTGGGCGGCTGGGTGCTGCGGCGCTTTCGTGA
GCGGCTTTATCCGGAGGTGCCGATTGGCTATCAGCAGATCGCGCTGGCCCTCTTTGGCGGCGTGCTGTTCGGCGGAGTGT
GGGGCAGTTGGTGGGCGGCTTTGGCGGGCGGCGCGGCACTGGGCGTGATTTCTACTGTCATCAATGCGGCGGCCCGCCGA
GCCGTGCGCGTTCCCGAACTGCTAACGCTGGGCGGCTCACTACTGGCTTTGGCGTTTTTCAGCGCACGTGGCAGCCTTTC
GCTGCTGACGGGTATTCAAGGTGGCCTCGCCGCTGCGGGGGCGCTCAGTCTGCTGGCGGGGGCGTACTGGTGGCTGAGCA
GTTCCAACGCCACCGCCGAAGACGACGACAGCCCCAGCGACCCCACCGCGATGGGTTTTGGGGATGTGAAGCTGGCGGCC
GTCATCGGAGCATTTCTGGGTTTCGAGCGCTTGCTGGTGGCCCTGGCAGTGGCAGTGGTGGCGGGCGCGGTGCTGGGCTT
AATCCAGCGCTTTACCGGCGGCGAAAATAAACTCAAATTCGGGCCGTATCTGGCGATAGGCGCGGTGGTGGCCTTGCTGT
GGGGTGCGGCGATTATTGAGGCTTATCAGGGGTATTTGGGGCTGTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(13-95)

Type IV leader peptidase family (Peptidase_A24)

(110-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.296

100

0.608

Multiple sequence alignment