Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EIB73_RS05530 | Genome accession | NZ_CP034159 |
| Coordinates | 1233089..1233742 (+) | Length | 217 a.a. |
| NCBI ID | WP_125023434.1 | Uniprot ID | A0A3G8XI01 |
| Organism | Kaistella carnis strain G0081 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1228089..1238742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EIB73_RS05515 (EIB73_05515) | aceB | 1228708..1230285 (-) | 1578 | WP_125023427.1 | malate synthase A | - |
| EIB73_RS05520 (EIB73_05520) | - | 1230464..1231933 (+) | 1470 | WP_125023429.1 | helix-turn-helix domain-containing protein | - |
| EIB73_RS05525 (EIB73_05525) | - | 1232039..1233016 (+) | 978 | WP_125023431.1 | lipopolysaccharide assembly protein LapB | - |
| EIB73_RS05530 (EIB73_05530) | comF | 1233089..1233742 (+) | 654 | WP_125023434.1 | ComF family protein | Machinery gene |
| EIB73_RS05535 (EIB73_05535) | upp | 1233797..1234447 (-) | 651 | WP_125023436.1 | uracil phosphoribosyltransferase | - |
| EIB73_RS05540 (EIB73_05540) | der | 1234529..1235836 (-) | 1308 | WP_125023438.1 | ribosome biogenesis GTPase Der | - |
| EIB73_RS05545 (EIB73_05545) | - | 1236027..1236581 (+) | 555 | WP_125023440.1 | LemA family protein | - |
| EIB73_RS05550 (EIB73_05550) | - | 1236585..1238507 (+) | 1923 | WP_125023442.1 | DUF2207 domain-containing protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25408.52 Da Isoelectric Point: 8.5072
>NTDB_id=329422 EIB73_RS05530 WP_125023434.1 1233089..1233742(+) (comF) [Kaistella carnis strain G0081]
MFLVDLLFPNRCLECNRIIHHNEVVCELCFDQIHFTHHHHSESNLLLEKCRLLFPIESAFALMQFEEESTSQKIIHQLKY
GSREKIGKIIANWTLEKVDFNSMKIDLLATVPLHPKKEKERGYNQLHLFADSLSKELKISCDHTLIKRNFYKKAQAKKRR
EQRTFNENLFSINKKISNQHILLIDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAMD
MFLVDLLFPNRCLECNRIIHHNEVVCELCFDQIHFTHHHHSESNLLLEKCRLLFPIESAFALMQFEEESTSQKIIHQLKY
GSREKIGKIIANWTLEKVDFNSMKIDLLATVPLHPKKEKERGYNQLHLFADSLSKELKISCDHTLIKRNFYKKAQAKKRR
EQRTFNENLFSINKKISNQHILLIDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAMD
Nucleotide
Download Length: 654 bp
>NTDB_id=329422 EIB73_RS05530 WP_125023434.1 1233089..1233742(+) (comF) [Kaistella carnis strain G0081]
ATGTTTTTAGTCGACTTACTTTTTCCCAACCGCTGTTTGGAATGCAACAGAATCATCCATCATAATGAAGTGGTTTGTGA
ACTGTGTTTTGATCAGATTCATTTTACGCATCATCACCATTCCGAAAGCAATCTTTTACTGGAGAAATGTCGGTTACTTT
TTCCTATTGAAAGTGCTTTTGCGCTGATGCAGTTTGAGGAAGAAAGCACAAGTCAGAAAATTATTCATCAGTTAAAATAC
GGCAGTCGGGAGAAAATCGGAAAAATCATCGCGAACTGGACTTTAGAAAAAGTTGATTTCAATTCTATGAAAATTGATCT
TTTGGCAACGGTTCCACTTCATCCGAAAAAAGAGAAAGAACGTGGTTATAATCAATTGCATTTGTTTGCAGATTCACTTT
CAAAAGAATTAAAAATTTCGTGCGATCACACTTTAATTAAAAGGAATTTCTACAAAAAAGCACAAGCCAAAAAACGGCGC
GAACAAAGAACATTTAATGAAAATCTGTTTTCAATTAACAAGAAAATTTCAAATCAGCATATTTTATTAATCGATGATGT
TTTCACGACTGGAAATACGATGAGCGCCGTGGCCTGGCAAATTTTAAAGGAAGGAAATAATAAGGTGAGTGTTTTGGTAA
TGGCGATGGATTAA
ATGTTTTTAGTCGACTTACTTTTTCCCAACCGCTGTTTGGAATGCAACAGAATCATCCATCATAATGAAGTGGTTTGTGA
ACTGTGTTTTGATCAGATTCATTTTACGCATCATCACCATTCCGAAAGCAATCTTTTACTGGAGAAATGTCGGTTACTTT
TTCCTATTGAAAGTGCTTTTGCGCTGATGCAGTTTGAGGAAGAAAGCACAAGTCAGAAAATTATTCATCAGTTAAAATAC
GGCAGTCGGGAGAAAATCGGAAAAATCATCGCGAACTGGACTTTAGAAAAAGTTGATTTCAATTCTATGAAAATTGATCT
TTTGGCAACGGTTCCACTTCATCCGAAAAAAGAGAAAGAACGTGGTTATAATCAATTGCATTTGTTTGCAGATTCACTTT
CAAAAGAATTAAAAATTTCGTGCGATCACACTTTAATTAAAAGGAATTTCTACAAAAAAGCACAAGCCAAAAAACGGCGC
GAACAAAGAACATTTAATGAAAATCTGTTTTCAATTAACAAGAAAATTTCAAATCAGCATATTTTATTAATCGATGATGT
TTTCACGACTGGAAATACGATGAGCGCCGTGGCCTGGCAAATTTTAAAGGAAGGAAATAATAAGGTGAGTGTTTTGGTAA
TGGCGATGGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.691 |
100 |
0.507 |