Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EB819_RS00835 | Genome accession | NZ_CP034157 |
| Coordinates | 179474..180124 (-) | Length | 216 a.a. |
| NCBI ID | WP_069799636.1 | Uniprot ID | A0A1E5UDI8 |
| Organism | Cloacibacterium normanense strain NRS-1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 174474..185124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EB819_RS00820 (EB819_00820) | - | 176528..177028 (-) | 501 | WP_069799641.1 | hypothetical protein | - |
| EB819_RS00825 (EB819_00825) | der | 177377..178684 (+) | 1308 | WP_069799639.1 | ribosome biogenesis GTPase Der | - |
| EB819_RS00830 (EB819_00830) | upp | 178820..179470 (+) | 651 | WP_069799638.1 | uracil phosphoribosyltransferase | - |
| EB819_RS00835 (EB819_00835) | comF | 179474..180124 (-) | 651 | WP_069799636.1 | ComF family protein | Machinery gene |
| EB819_RS00840 (EB819_00840) | - | 180275..180724 (-) | 450 | WP_069799634.1 | DUF4442 domain-containing protein | - |
| EB819_RS00845 (EB819_00845) | - | 180836..181702 (+) | 867 | WP_245993190.1 | hypothetical protein | - |
| EB819_RS00850 (EB819_00850) | - | 181776..183905 (-) | 2130 | WP_069799632.1 | M3 family metallopeptidase | - |
| EB819_RS00855 (EB819_00855) | - | 184031..184834 (+) | 804 | WP_069799629.1 | head GIN domain-containing protein | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 25300.37 Da Isoelectric Point: 8.8504
>NTDB_id=329392 EB819_RS00835 WP_069799636.1 179474..180124(-) (comF) [Cloacibacterium normanense strain NRS-1]
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDVLITVPLHPKKLKKRGYNQLHVFADTLSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDS
MLLDLLFPNRCLHCNTIISKDELVCHVCFPQIKFSHFNFYEENPLKQRCKLLFPVKNAYAVMEFQEEALSQKIIHQLKYR
SQEKVGKIMAEWTLERIYLSEKPDVLITVPLHPKKLKKRGYNQLHVFADTLSKNWEIPHHKEALKRNSYQKAQAQKDKSH
RAETKYDFSLTEEISGKHVLLIDDVFTTGNTISAIAWEILKNPRNEVSVLVMAFDS
Nucleotide
Download Length: 651 bp
>NTDB_id=329392 EB819_RS00835 WP_069799636.1 179474..180124(-) (comF) [Cloacibacterium normanense strain NRS-1]
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGCAATACCATCATTTCAAAAGACGAATTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAAAAAATTATTCATCAACTCAAATATCGT
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCGGATGTTTTAAT
TACGGTTCCACTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATGTTTTTGCAGACACGCTTTCTAAAA
ATTGGGAAATCCCACATCATAAAGAAGCGCTTAAAAGAAATTCTTACCAAAAAGCACAAGCCCAAAAAGACAAATCTCAC
CGCGCCGAAACGAAATACGATTTCTCGCTAACCGAAGAAATTTCCGGGAAACATGTTTTGTTGATAGATGATGTTTTCAC
CACGGGAAATACAATAAGCGCCATTGCTTGGGAAATTCTGAAAAATCCAAGGAATGAAGTGAGTGTTTTGGTAATGGCTT
TTGATTCGTAG
ATGCTGCTGGATTTACTGTTCCCGAACAGATGTCTACATTGCAATACCATCATTTCAAAAGACGAATTGGTTTGCCATGT
ATGTTTCCCTCAAATTAAGTTTTCTCATTTTAATTTCTACGAAGAAAATCCTCTGAAACAGAGATGTAAGCTTTTATTTC
CCGTGAAAAATGCTTATGCTGTGATGGAATTTCAAGAAGAAGCATTGAGCCAAAAAATTATTCATCAACTCAAATATCGT
TCTCAGGAAAAAGTTGGAAAAATCATGGCTGAATGGACTTTGGAAAGAATTTACCTTTCAGAAAAACCGGATGTTTTAAT
TACGGTTCCACTTCATCCTAAAAAATTAAAAAAACGAGGTTATAATCAGTTGCATGTTTTTGCAGACACGCTTTCTAAAA
ATTGGGAAATCCCACATCATAAAGAAGCGCTTAAAAGAAATTCTTACCAAAAAGCACAAGCCCAAAAAGACAAATCTCAC
CGCGCCGAAACGAAATACGATTTCTCGCTAACCGAAGAAATTTCCGGGAAACATGTTTTGTTGATAGATGATGTTTTCAC
CACGGGAAATACAATAAGCGCCATTGCTTGGGAAATTCTGAAAAATCCAAGGAATGAAGTGAGTGTTTTGGTAATGGCTT
TTGATTCGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
100 |
0.509 |