Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBF16_RS01355 Genome accession   NZ_CP034148
Coordinates   292050..292613 (+) Length   187 a.a.
NCBI ID   WP_010252180.1    Uniprot ID   -
Organism   Pantoea agglomerans strain L15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 287050..297613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBF16_RS01340 (CBF16_01340) - 287323..287646 (+) 324 WP_010252186.1 MmcQ/YjbR family DNA-binding protein -
  CBF16_RS01345 (CBF16_01345) - 287699..288763 (-) 1065 WP_010252184.1 NAD(P)-dependent alcohol dehydrogenase -
  CBF16_RS01350 (CBF16_01350) uvrA 288997..291825 (-) 2829 WP_010252182.1 excinuclease ABC subunit UvrA -
  CBF16_RS01355 (CBF16_01355) ssb 292050..292613 (+) 564 WP_010252180.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CBF16_RS01360 (CBF16_01360) - 292685..293206 (-) 522 WP_029519657.1 isochorismatase family protein -
  CBF16_RS01365 (CBF16_01365) - 293327..294154 (+) 828 WP_010252176.1 AraC family transcriptional regulator -
  CBF16_RS01370 (CBF16_01370) - 294232..295191 (+) 960 WP_033770841.1 DMT family transporter -
  CBF16_RS01375 (CBF16_01375) - 296116..296511 (-) 396 WP_003855733.1 transposase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19908.83 Da        Isoelectric Point: 5.2456

>NTDB_id=329367 CBF16_RS01355 WP_010252180.1 292050..292613(+) (ssb) [Pantoea agglomerans strain L15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQS
RPQPQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=329367 CBF16_RS01355 WP_010252180.1 292050..292613(+) (ssb) [Pantoea agglomerans strain L15]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGATCGCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACCGAAGTCGTGGTTAACGTTGG
TGGTACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGTAATGCCGGTGCAGGCGCTCCAGCCGGTGGTGGCGCGCAGG
GCGGTGGCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAATAACCAGTTCAGTGGTGGCGCGCAGTCC
CGTCCGCAGCCGCAGCCACAGAGCGCGCCGGCCAGCAACAACAACGAACCACCAATGGATTTCGACGACGATATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.229

100

0.701
  ssb Glaesserella parasuis strain SC1401

56.021

100

0.572
  ssb Neisseria gonorrhoeae MS11

46.354

100

0.476
  ssb Neisseria meningitidis MC58

46.561

100

0.471

Multiple sequence alignment