Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EAL91_RS02795 Genome accession   NZ_CP034147
Coordinates   574133..574417 (-) Length   94 a.a.
NCBI ID   WP_121054646.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569133..579417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS02770 - 569769..570905 (-) 1137 WP_121054643.1 VirB8/TrbF family protein -
  EAL91_RS08375 - 570898..571038 (-) 141 WP_121054644.1 type IV secretion system protein VirB7 -
  EAL91_RS02780 - 571035..573610 (-) 2576 Protein_524 VirB4 family type IV secretion/conjugal transfer ATPase -
  EAL91_RS02785 - 573610..573846 (-) 237 WP_108389013.1 hypothetical protein -
  EAL91_RS02790 comB3 573858..574121 (-) 264 WP_121054645.1 competence protein ComB Machinery gene
  EAL91_RS02795 comB2 574133..574417 (-) 285 WP_121054646.1 TrbC/VirB2 family protein Machinery gene
  EAL91_RS02800 - 574395..574892 (-) 498 WP_060474814.1 hypothetical protein -
  EAL91_RS02805 - 574885..575115 (-) 231 WP_121054647.1 hypothetical protein -
  EAL91_RS02810 - 575118..575907 (-) 790 Protein_530 integrase -
  EAL91_RS02815 - 575961..576188 (-) 228 Protein_531 DNA methyltransferase -
  EAL91_RS02820 - 576175..577581 (-) 1407 WP_164997390.1 site-specific DNA-methyltransferase -
  EAL91_RS02825 crdR 577646..578287 (+) 642 WP_121054650.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10768.11 Da        Isoelectric Point: 11.1589

>NTDB_id=329354 EAL91_RS02795 WP_121054646.1 574133..574417(-) (comB2) [Helicobacter pylori strain HP14039]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGSAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=329354 EAL91_RS02795 WP_121054646.1 574133..574417(-) (comB2) [Helicobacter pylori strain HP14039]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTTCTGCAATCTTT
TTTAAAGCTCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment