Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EAL91_RS01225 Genome accession   NZ_CP034147
Coordinates   247465..247746 (-) Length   93 a.a.
NCBI ID   WP_108388551.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 242465..252746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS01205 - 243192..244532 (-) 1341 WP_164997381.1 COG3014 family protein -
  EAL91_RS01215 comB4 244837..247200 (-) 2364 WP_121054136.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EAL91_RS01220 comB3 247202..247465 (-) 264 WP_121054137.1 competence protein ComB Machinery gene
  EAL91_RS01225 comB2 247465..247746 (-) 282 WP_108388551.1 TrbC/VirB2 family protein Machinery gene
  EAL91_RS01230 - 247893..248720 (-) 828 WP_121054138.1 DUF5718 family protein -
  EAL91_RS01235 - 248808..249860 (-) 1053 WP_121054139.1 MnmA/TRMU family protein -
  EAL91_RS01240 dnaG 249857..251536 (-) 1680 WP_121054140.1 DNA primase -
  EAL91_RS01250 groES 251823..252179 (+) 357 WP_075655934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10541.78 Da        Isoelectric Point: 9.1450

>NTDB_id=329348 EAL91_RS01225 WP_108388551.1 247465..247746(-) (comB2) [Helicobacter pylori strain HP14039]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALESQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=329348 EAL91_RS01225 WP_108388551.1 247465..247746(-) (comB2) [Helicobacter pylori strain HP14039]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCTCTAGAATCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGAAATTTAGACCGGTGGAAAGAGATTTTATTCACTATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment