Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SUB_RS03460 Genome accession   NC_012004
Coordinates   646923..647801 (+) Length   292 a.a.
NCBI ID   WP_012658195.1    Uniprot ID   -
Organism   Streptococcus uberis 0140J     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 641923..652801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS03430 (SUB0671) - 642213..643088 (+) 876 WP_012658189.1 F0F1 ATP synthase subunit gamma -
  SUB_RS03435 (SUB0672) atpD 643211..644617 (+) 1407 WP_012658190.1 F0F1 ATP synthase subunit beta -
  SUB_RS03440 (SUB0673) - 644631..645047 (+) 417 WP_012658191.1 F0F1 ATP synthase subunit epsilon -
  SUB_RS03445 (SUB0674) - 645129..645353 (+) 225 WP_012658192.1 DUF1146 family protein -
  SUB_RS03450 (SUB0675) murA 645428..646699 (+) 1272 WP_012658193.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SUB_RS03455 (SUB0676) - 646703..646891 (+) 189 WP_012658194.1 DNA-directed RNA polymerase subunit beta -
  SUB_RS03460 (SUB0677) endA 646923..647801 (+) 879 WP_012658195.1 DNA/RNA non-specific endonuclease Machinery gene
  SUB_RS03465 (SUB0678) pheS 648104..649147 (+) 1044 WP_012658196.1 phenylalanine--tRNA ligase subunit alpha -
  SUB_RS03470 (SUB0679) - 649194..649718 (+) 525 WP_012658197.1 GNAT family N-acetyltransferase -
  SUB_RS03475 (SUB0680) pheT 649733..652138 (+) 2406 WP_012658198.1 phenylalanine--tRNA ligase subunit beta -
  SUB_RS03480 (SUB0681) - 652240..652614 (+) 375 WP_012658199.1 OsmC family protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32181.88 Da        Isoelectric Point: 9.8437

>NTDB_id=32925 SUB_RS03460 WP_012658195.1 646923..647801(+) (endA) [Streptococcus uberis 0140J]
MSNKYPSGKKISAILIALLITGLTALSQGNQSANNPIAHVLQSISGQGNRQSNQKDSQNPDTPSYQLASSVLTNQVKQQL
GNQIEWNGAGAFIINHNKTDLKAKVSSLPYAHNETKMVQGQKVPSRANALLARSTRQYRDRNETGNGYTFWKPVGWHQIH
GLSGEYDHAVDRGHLLGYALVGGLKGFDASTSNPENIAVQMSWANQAYLSDSTGQNFYETLIRKSLDKNKRVRYRVTLIY
EGDNLISSGSHLEAKSDDGSLEFNVFVPNVQKGLKMNYYNGSVEKDAYQKAS

Nucleotide


Download         Length: 879 bp        

>NTDB_id=32925 SUB_RS03460 WP_012658195.1 646923..647801(+) (endA) [Streptococcus uberis 0140J]
ATGTCAAATAAATACCCAAGTGGCAAAAAAATAAGTGCCATTCTAATAGCTCTGCTCATTACAGGATTAACAGCTCTTTC
TCAGGGCAATCAATCTGCCAATAATCCAATTGCTCATGTTTTGCAGAGCATTTCCGGGCAGGGAAATAGGCAGAGCAATC
AAAAAGATTCTCAAAATCCGGATACTCCCAGTTATCAATTAGCAAGTTCTGTGCTTACAAATCAAGTCAAGCAACAATTA
GGTAATCAGATTGAGTGGAATGGCGCCGGAGCTTTTATTATTAATCACAATAAGACAGATTTAAAGGCAAAAGTTTCAAG
TTTACCTTATGCACATAATGAAACGAAAATGGTACAAGGTCAAAAGGTACCAAGTCGAGCTAATGCCTTACTTGCTCGCT
CAACGAGACAATATAGAGATCGAAACGAAACTGGAAATGGTTATACTTTTTGGAAACCAGTTGGATGGCATCAAATACAT
GGTCTATCAGGGGAATATGACCATGCCGTTGATCGCGGGCATTTATTAGGCTATGCCTTAGTCGGAGGTTTAAAAGGTTT
TGATGCTTCAACAAGTAATCCAGAGAACATTGCTGTTCAAATGTCATGGGCTAACCAAGCATATCTGAGTGATTCTACTG
GACAAAATTTCTATGAAACTTTAATTCGAAAAAGTTTAGATAAGAATAAGCGGGTTCGCTATCGAGTGACCTTAATTTAT
GAAGGTGATAATCTGATTTCGAGTGGTAGTCATTTGGAAGCAAAGTCGGATGATGGCAGCTTAGAATTCAATGTTTTTGT
ACCAAATGTTCAAAAAGGGTTAAAAATGAATTACTATAATGGTAGCGTTGAAAAAGATGCTTACCAGAAAGCAAGTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(91-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.317

77.74

0.5
  endA Streptococcus pneumoniae D39

64.317

77.74

0.5
  endA Streptococcus pneumoniae R6

64.317

77.74

0.5
  endA Streptococcus pneumoniae TIGR4

64.317

77.74

0.5

Multiple sequence alignment