Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MCCL_RS07000 Genome accession   NC_011999
Coordinates   1360287..1362677 (-) Length   796 a.a.
NCBI ID   WP_012657164.1    Uniprot ID   B9E6Z8
Organism   Macrococcoides caseolyticum JCSC5402     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355287..1367677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS06980 (MCCL_1255) - 1356352..1356663 (-) 312 WP_041636040.1 DUF1292 domain-containing protein -
  MCCL_RS06985 (MCCL_1256) ruvX 1356679..1357098 (-) 420 WP_012657161.1 Holliday junction resolvase RuvX -
  MCCL_RS06990 (MCCL_1257) - 1357091..1357336 (-) 246 WP_012657162.1 IreB family regulatory phosphoprotein -
  MCCL_RS06995 (MCCL_1258) alaS 1357416..1360040 (-) 2625 WP_012657163.1 alanine--tRNA ligase -
  MCCL_RS07000 (MCCL_1259) recD2 1360287..1362677 (-) 2391 WP_012657164.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MCCL_RS07005 (MCCL_1260) - 1362680..1363339 (-) 660 WP_012657165.1 tetratricopeptide repeat protein -
  MCCL_RS07010 (MCCL_1261) mnmA 1363400..1364515 (-) 1116 WP_012657166.1 tRNA 2-thiouridine(34) synthase MnmA -
  MCCL_RS07015 (MCCL_1262) - 1364527..1365654 (-) 1128 WP_012657167.1 cysteine desulfurase family protein -
  MCCL_RS07020 (MCCL_1263) - 1365826..1366821 (+) 996 WP_012657168.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90332.64 Da        Isoelectric Point: 4.5508

>NTDB_id=32886 MCCL_RS07000 WP_012657164.1 1360287..1362677(-) (recD2) [Macrococcoides caseolyticum JCSC5402]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIITHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKNQVKEFEQ
SEVLMAIGELEALFEVSYAERQKDALITAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPDDAQIIFVGDQDQL
PSVGPGQVFKDMIDAHIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDIKKRYNDRSFIPCTSNQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEITHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFCG
DVHAFNEGIKRIGNTRFTSFYQFLIDYFNEDEINDKKQDDQGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=32886 MCCL_RS07000 WP_012657164.1 1360287..1362677(-) (recD2) [Macrococcoides caseolyticum JCSC5402]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCTGAAGTGATTGAATCAAATGAAGATTTTGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCAGAAGGCGATACATATACTTTTACCGGTAAGATTATAACGCATCCGAAGTATGGAAAGCAGCTCCAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGACGGTATTATTCATTATTTATCAAGTGATTTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTACCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGCACGATTCATGATAATCAGGCGATTGAGAAAATCATG
ATTCAGCTGAATGAATTTGGGTTCGGGCCGCAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTGAAGGT
GATTAATGAATCTCCGTATCAACTCGTGATGGATATTGAAGGGATCGGATTTAATAAAGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAGCGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CACACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGCCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATTCCAAGTC
TATTCTATTCTGAAACAAAAGCTGTACAAATATTGCATCGATTAATGAACCATAAGAATCAGGTGAAAGAGTTCGAACAG
TCAGAAGTATTGATGGCAATCGGAGAACTGGAAGCACTGTTTGAAGTCAGCTATGCAGAACGGCAGAAAGATGCGCTTAT
TACGGCGATGAACTCTAAGCTGATGATATTAACGGGTGGGCCTGGTACAGGAAAGACGACAGTCGTACGTGGTATTGTTA
ATTTATATGCCGAGCTGCATGGCTTAAGTCTAGATTATGATGACTATGACGGACAGGACTATCCGATTGTCGTCGCAGCA
CCGACTGGTCGTGCGTCAAAGCGTCTTCAGGAATCGACGGGACTTGAAGCGACGACGATACACAGGTTAATTGGATGGAC
GAAAGAAAATAAACCGGACGACGTGCTGGAAACCGAAATTACAGCGAAACTGGTCATTATTGATGAAATGTCAATGGTTG
ATACGTGGCTTATGTTTCAATTGATGAAGGCTGTACCAGACGATGCCCAGATTATATTTGTCGGTGACCAGGACCAGCTT
CCTTCGGTCGGTCCAGGTCAAGTATTTAAGGATATGATTGATGCACACATTATGCCTCAGATTGAACTGAACGAGGTGTA
TAGACAGCAGGAAGGTTCCTCGATTGTCGAACTAGCACATCAGATTAAGCGCAATGAACCTTTTGACATTAAGAAAAGAT
ATAATGACAGAAGTTTTATACCGTGTACAAGCAACCAAATTCCGGAAGTGATTGAGAAAATTGTACGCAGCGCTGTGAAT
AAAGGGTACGATATGCGTGACATACAAGTACTCGCACCGATATATAGGGGGCCAGCAGGTATACGTGCATTGAATAAAGT
ATTGCAGGAAATACTGAATCCAAGCGATGAAAACAAACGTGAACTGCAATTTGGTGATGTTTATTTCAGAACGGGTGATA
AAGTTTTGCAGCTTGTCAATCGACCTGAAGATAATGTATTTAATGGTGATATTGGAGAAGTCACTGGTATATTTATGGCA
GCTGAGAATGCATTAAATAAAGATGTTGTGATTGTTGACTATGATGGCAGTGAAGTAACGTATACGAAAGCAGATTTAAT
GGAAATTACACATGCATATTGCTGTTCTATTCATAAGTCCCAAGGTTCGGAATTTCCGATAGTAATCATGCCTGTTGTCA
ATCAGTACTACAGAATGTTGCAGAAGAATATTCTGTATACGGGATTAACACGTGCAAAACAATCCCTAATATTCTGTGGA
GATGTTCACGCTTTTAATGAAGGAATTAAGCGTATCGGTAATACAAGGTTTACAAGCTTCTATCAGTTTCTAATCGATTA
TTTTAACGAAGACGAAATAAATGACAAAAAGCAAGATGACCAAGGTAATATACTACCTTTCAACGTGGGGGAGATGACTG
AAGACAATATGCATCTTGTTGATCCGATGATCAATATGGAAGGTATAACACCATATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9E6Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.061

100

0.514

Multiple sequence alignment