Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   FOY95_RS08855 Genome accession   NZ_CP041773
Coordinates   1834244..1834768 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 519119     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829244..1839768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY95_RS08840 (FOY95_08840) aroB 1830360..1831466 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  FOY95_RS08845 (FOY95_08845) aroK 1831516..1832034 (-) 519 WP_003095833.1 shikimate kinase AroK -
  FOY95_RS08850 (FOY95_08850) pilQ 1832046..1834190 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  FOY95_RS08855 (FOY95_08855) comL/pilP 1834244..1834768 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  FOY95_RS08860 (FOY95_08860) pilO 1834765..1835388 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOY95_RS08865 (FOY95_08865) pilN 1835385..1835981 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  FOY95_RS08870 (FOY95_08870) pilM 1835981..1837045 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  FOY95_RS08875 (FOY95_08875) - 1837230..1839701 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=328739 FOY95_RS08855 WP_003095836.1 1834244..1834768(-) (comL/pilP) [Pseudomonas aeruginosa strain 519119]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=328739 FOY95_RS08855 WP_003095836.1 1834244..1834768(-) (comL/pilP) [Pseudomonas aeruginosa strain 519119]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362