Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EHU52_RS07180 Genome accession   NZ_CP034071
Coordinates   1468935..1469216 (-) Length   93 a.a.
NCBI ID   WP_001277275.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463935..1474216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS07160 - 1464646..1466076 (-) 1431 WP_164471963.1 COG3014 family protein -
  EHU52_RS07170 comB4 1466307..1468670 (-) 2364 WP_124733602.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EHU52_RS07175 comB3 1468672..1468935 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  EHU52_RS07180 comB2 1468935..1469216 (-) 282 WP_001277275.1 TrbC/VirB2 family protein Machinery gene
  EHU52_RS07185 - 1469361..1470188 (-) 828 WP_124733603.1 DUF5718 family protein -
  EHU52_RS07190 - 1470278..1471330 (-) 1053 WP_124733604.1 MnmA/TRMU family protein -
  EHU52_RS07195 dnaG 1471327..1473006 (-) 1680 WP_124733605.1 DNA primase -
  EHU52_RS07200 groES 1473290..1473646 (+) 357 WP_000671952.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10565.85 Da        Isoelectric Point: 9.0456

>NTDB_id=328708 EHU52_RS07180 WP_001277275.1 1468935..1469216(-) (comB2) [Helicobacter pylori strain Hpbs1]
MSAYFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=328708 EHU52_RS07180 WP_001277275.1 1468935..1469216(-) (comB2) [Helicobacter pylori strain Hpbs1]
ATGTCCGCTTATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment