Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FOY90_RS05545 Genome accession   NZ_CP041772
Coordinates   1153607..1154032 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 243931     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148607..1159032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY90_RS05530 (FOY90_05530) pilX 1149170..1149757 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  FOY90_RS05535 (FOY90_05535) pilY1 1149769..1153261 (+) 3493 Protein_1071 type 4a pilus biogenesis protein PilY1 -
  FOY90_RS05540 (FOY90_05540) pilY2 1153263..1153610 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  FOY90_RS05545 (FOY90_05545) comF 1153607..1154032 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  FOY90_RS05550 (FOY90_05550) ispH 1154079..1155026 (-) 948 Protein_1074 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FOY90_RS05555 (FOY90_05555) fkpB 1155112..1155554 (-) 443 Protein_1075 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FOY90_RS05560 (FOY90_05560) lspA 1155547..1156056 (-) 510 WP_003094728.1 signal peptidase II -
  FOY90_RS05565 (FOY90_05565) ileS 1156049..1158880 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=328636 FOY90_RS05545 WP_003094721.1 1153607..1154032(+) (comF) [Pseudomonas aeruginosa strain 243931]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=328636 FOY90_RS05545 WP_003094721.1 1153607..1154032(+) (comF) [Pseudomonas aeruginosa strain 243931]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAAGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383