Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SP670_RS09300 Genome accession   NC_014498
Coordinates   1743151..1744422 (+) Length   423 a.a.
NCBI ID   WP_001113213.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738151..1749422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS09260 (SP670_1863) - 1738338..1739372 (-) 1035 WP_000747916.1 ATP-binding protein -
  SP670_RS09265 (SP670_1864) - 1739491..1739640 (-) 150 Protein_1771 7,8-dihydro-8-oxoguanine-triphosphatase -
  SP670_RS09270 (SP670_1865) - 1739621..1740709 (-) 1089 WP_000719720.1 site-2 protease family protein -
  SP670_RS09275 (SP670_1866) - 1740728..1741198 (-) 471 WP_000257082.1 DUF3013 family protein -
  SP670_RS09280 (SP670_1867) - 1741489..1741941 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SP670_RS09285 (SP670_1868) - 1741978..1742157 (-) 180 WP_001132285.1 type II toxin-antitoxin system HicA family toxin -
  SP670_RS09290 (SP670_1869) - 1742294..1742473 (-) 180 WP_001048906.1 hypothetical protein -
  SP670_RS09295 (SP670_1870) - 1742638..1742859 (-) 222 WP_000425690.1 hypothetical protein -
  SP670_RS09300 (SP670_1871) rarA 1743151..1744422 (+) 1272 WP_001113213.1 replication-associated recombination protein A Machinery gene
  SP670_RS09310 (SP670_1872) - 1744969..1746288 (-) 1320 WP_000502563.1 glycoside hydrolase family 32 protein -
  SP670_RS09315 (SP670_1873) - 1746298..1747914 (-) 1617 WP_000669749.1 ABC transporter substrate-binding protein -
  SP670_RS09320 (SP670_1874) - 1747943..1748833 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46980.41 Da        Isoelectric Point: 5.9140

>NTDB_id=32849 SP670_RS09300 WP_001113213.1 1743151..1744422(+) (rarA) [Streptococcus pneumoniae 670-6B]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=32849 SP670_RS09300 WP_001113213.1 1743151..1744422(+) (rarA) [Streptococcus pneumoniae 670-6B]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCAACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563

Multiple sequence alignment