Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EGH18_RS02720 Genome accession   NZ_CP034028
Coordinates   448766..449428 (+) Length   220 a.a.
NCBI ID   WP_041421240.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443766..454428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS02685 (EGH18_02685) cysT 443940..444776 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  EGH18_RS02690 (EGH18_02690) - 444957..445289 (+) 333 WP_003687908.1 hypothetical protein -
  EGH18_RS02695 (EGH18_02695) - 445620..446129 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH18_RS02705 (EGH18_02705) - 446361..446942 (-) 582 WP_003690895.1 superoxide dismutase -
  EGH18_RS02715 (EGH18_02715) dnaB 447106..448509 (+) 1404 WP_012503477.1 replicative DNA helicase -
  EGH18_RS02720 (EGH18_02720) pilH 448766..449428 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH18_RS02725 (EGH18_02725) pilI 449460..450074 (+) 615 WP_124693319.1 type IV pilus modification protein PilV Machinery gene
  EGH18_RS02730 (EGH18_02730) pilJ 450071..451030 (+) 960 WP_071198137.1 PilW family protein Machinery gene
  EGH18_RS02735 (EGH18_02735) pilK 451009..451617 (+) 609 WP_047926669.1 pilus assembly protein Machinery gene
  EGH18_RS02740 (EGH18_02740) pilL 451619..452089 (+) 471 WP_169577278.1 PilX family type IV pilin Machinery gene
  EGH18_RS02745 (EGH18_02745) - 452159..452467 (-) 309 WP_010951048.1 AzlD family protein -
  EGH18_RS02750 (EGH18_02750) - 452464..453173 (-) 710 Protein_455 AzlC family ABC transporter permease -
  EGH18_RS02755 (EGH18_02755) dut 453339..453791 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24496.91 Da        Isoelectric Point: 9.6166

>NTDB_id=328329 EGH18_RS02720 WP_041421240.1 448766..449428(+) (pilH) [Neisseria gonorrhoeae strain FQ04]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=328329 EGH18_RS02720 WP_041421240.1 448766..449428(+) (pilH) [Neisseria gonorrhoeae strain FQ04]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959

Multiple sequence alignment