Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   FGF55_RS07980 Genome accession   NZ_CP041691
Coordinates   1550005..1550454 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545005..1555454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS07940 (FGF55_07940) ctaE 1545137..1545760 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  FGF55_RS07945 (FGF55_07945) ctaF 1545763..1546095 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  FGF55_RS07950 (FGF55_07950) ctaG 1546120..1547004 (+) 885 WP_088056515.1 cytochrome c oxidase assembly factor CtaG -
  FGF55_RS07955 (FGF55_07955) - 1547038..1547397 (-) 360 WP_007409688.1 YugN family protein -
  FGF55_RS07960 (FGF55_07960) - 1547537..1547980 (+) 444 WP_014417702.1 CBS domain-containing protein -
  FGF55_RS07965 (FGF55_07965) - 1548065..1549105 (+) 1041 WP_014417703.1 CAP domain-containing protein -
  FGF55_RS07970 (FGF55_07970) - 1549269..1549679 (+) 411 WP_014417704.1 YlbD family protein -
  FGF55_RS07975 (FGF55_07975) - 1549695..1549934 (+) 240 WP_003154475.1 YlbE-like family protein -
  FGF55_RS07980 (FGF55_07980) ylbF 1550005..1550454 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  FGF55_RS07985 (FGF55_07985) - 1550513..1550785 (+) 273 WP_014417705.1 YlbG family protein -
  FGF55_RS07995 (FGF55_07995) rsmD 1551084..1551638 (+) 555 WP_014417706.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FGF55_RS08000 (FGF55_08000) coaD 1551643..1552125 (+) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  FGF55_RS08005 (FGF55_08005) ylbJ 1552144..1553370 (-) 1227 WP_014417708.1 sporulation integral membrane protein YlbJ -
  FGF55_RS08010 (FGF55_08010) - 1553550..1554329 (+) 780 WP_014304961.1 patatin family protein -
  FGF55_RS08015 (FGF55_08015) sepM 1554335..1555357 (+) 1023 WP_014417709.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=328032 FGF55_RS07980 WP_003154472.1 1550005..1550454(+) (ylbF) [Bacillus amyloliquefaciens strain ZJU1]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=328032 FGF55_RS07980 WP_003154472.1 1550005..1550454(+) (ylbF) [Bacillus amyloliquefaciens strain ZJU1]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879

Multiple sequence alignment