Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GEOB_RS02175 | Genome accession | NC_011979 |
| Coordinates | 516344..517414 (-) | Length | 356 a.a. |
| NCBI ID | WP_012645537.1 | Uniprot ID | B9LZ76 |
| Organism | Geotalea daltonii FRC-32 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 511344..522414
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEOB_RS02160 (Geob_0436) | - | 511966..513939 (+) | 1974 | WP_012645534.1 | M48 family metallopeptidase | - |
| GEOB_RS02165 (Geob_0437) | - | 514143..515780 (+) | 1638 | WP_012645535.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| GEOB_RS02170 (Geob_0438) | - | 515807..516256 (+) | 450 | WP_012645536.1 | SseB family protein | - |
| GEOB_RS02175 (Geob_0439) | pilT | 516344..517414 (-) | 1071 | WP_012645537.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GEOB_RS02180 (Geob_0440) | - | 517434..519089 (-) | 1656 | WP_012645538.1 | GspE/PulE family protein | - |
| GEOB_RS02185 (Geob_0441) | - | 519277..520284 (+) | 1008 | WP_012645539.1 | hypothetical protein | - |
| GEOB_RS02190 (Geob_0442) | - | 520314..521279 (-) | 966 | WP_012645540.1 | transglycosylase domain-containing protein | - |
| GEOB_RS02195 (Geob_0443) | pdxA | 521276..522292 (-) | 1017 | WP_012645541.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39642.78 Da Isoelectric Point: 7.2386
>NTDB_id=32799 GEOB_RS02175 WP_012645537.1 516344..517414(-) (pilT) [Geotalea daltonii FRC-32]
MARIDALFKMMNEQGASDLHLSTGSPPIFRLNGEMERLNFKSLGHEDLRSILYEILSETQIADFEKRKDLDFAYSVPGIA
RFRGNMLMQHRGIAAVFRIIPSKILTADQLNLPEGVRKLTALKKGLVLVTGPTGSGKSTTLAAMIDLINSTRREHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFAAALRAALREDPDVILVGEMRDLETISLAMSAAETGHLVFGTLHTSSAAKTVDR
IIDVFPKDAQEQVRAMLSESLKGVISQQLLRNADGKGRSAALEIMMGTPAIGNLIREGKTFQIPSIMQTAKKDGMQLMDQ
HILDLLKTKKVSPEEAYRCSADKKQFEQYLPERPQQ
MARIDALFKMMNEQGASDLHLSTGSPPIFRLNGEMERLNFKSLGHEDLRSILYEILSETQIADFEKRKDLDFAYSVPGIA
RFRGNMLMQHRGIAAVFRIIPSKILTADQLNLPEGVRKLTALKKGLVLVTGPTGSGKSTTLAAMIDLINSTRREHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFAAALRAALREDPDVILVGEMRDLETISLAMSAAETGHLVFGTLHTSSAAKTVDR
IIDVFPKDAQEQVRAMLSESLKGVISQQLLRNADGKGRSAALEIMMGTPAIGNLIREGKTFQIPSIMQTAKKDGMQLMDQ
HILDLLKTKKVSPEEAYRCSADKKQFEQYLPERPQQ
Nucleotide
Download Length: 1071 bp
>NTDB_id=32799 GEOB_RS02175 WP_012645537.1 516344..517414(-) (pilT) [Geotalea daltonii FRC-32]
ATGGCACGTATTGACGCACTTTTCAAGATGATGAACGAGCAGGGGGCATCGGACCTTCATTTGTCCACCGGCTCCCCTCC
AATTTTCCGCCTCAATGGCGAAATGGAGCGTCTCAACTTCAAAAGCCTCGGGCACGAAGATCTTAGGTCCATCCTCTATG
AGATCCTCTCCGAGACCCAGATTGCCGACTTCGAAAAGCGCAAGGATCTGGACTTCGCCTATTCGGTACCCGGCATAGCC
CGCTTCCGCGGCAACATGCTCATGCAGCATCGGGGCATAGCCGCCGTCTTCCGCATCATCCCCAGCAAGATTCTGACGGC
AGACCAGTTGAATCTTCCCGAAGGGGTACGGAAGCTGACCGCTTTGAAAAAGGGGCTTGTCCTCGTCACCGGCCCCACCG
GCTCCGGGAAATCCACCACCCTGGCAGCCATGATCGATCTGATAAACTCCACCCGGCGCGAGCATATCCTTACCCTGGAA
GACCCGCTGGAATTCATTCACGAGAACAAAATGTCCCTGTTCAACCAGCGGCAGATCGGTGAACATTCGGAAAGTTTTGC
CGCCGCCCTGCGCGCCGCCCTGCGCGAAGACCCGGATGTGATCCTGGTGGGCGAGATGCGCGACCTTGAAACCATCAGCC
TGGCCATGAGCGCCGCCGAGACCGGTCACCTGGTCTTCGGCACCCTCCACACCAGTTCCGCGGCCAAGACTGTTGACCGG
ATCATCGACGTCTTCCCCAAGGACGCCCAGGAGCAGGTACGGGCCATGCTGTCAGAGTCGCTCAAGGGGGTCATCAGCCA
GCAGCTCCTGCGCAATGCCGACGGCAAGGGTAGATCGGCGGCCCTGGAAATCATGATGGGAACGCCAGCCATCGGCAACT
TGATCCGCGAAGGAAAGACCTTCCAGATACCTTCCATCATGCAAACGGCAAAGAAAGACGGCATGCAGCTCATGGACCAG
CACATCCTCGACCTGTTGAAGACGAAGAAGGTCTCCCCCGAAGAGGCCTATCGATGCTCCGCCGATAAGAAACAATTCGA
ACAGTACCTGCCCGAACGCCCCCAGCAGTAG
ATGGCACGTATTGACGCACTTTTCAAGATGATGAACGAGCAGGGGGCATCGGACCTTCATTTGTCCACCGGCTCCCCTCC
AATTTTCCGCCTCAATGGCGAAATGGAGCGTCTCAACTTCAAAAGCCTCGGGCACGAAGATCTTAGGTCCATCCTCTATG
AGATCCTCTCCGAGACCCAGATTGCCGACTTCGAAAAGCGCAAGGATCTGGACTTCGCCTATTCGGTACCCGGCATAGCC
CGCTTCCGCGGCAACATGCTCATGCAGCATCGGGGCATAGCCGCCGTCTTCCGCATCATCCCCAGCAAGATTCTGACGGC
AGACCAGTTGAATCTTCCCGAAGGGGTACGGAAGCTGACCGCTTTGAAAAAGGGGCTTGTCCTCGTCACCGGCCCCACCG
GCTCCGGGAAATCCACCACCCTGGCAGCCATGATCGATCTGATAAACTCCACCCGGCGCGAGCATATCCTTACCCTGGAA
GACCCGCTGGAATTCATTCACGAGAACAAAATGTCCCTGTTCAACCAGCGGCAGATCGGTGAACATTCGGAAAGTTTTGC
CGCCGCCCTGCGCGCCGCCCTGCGCGAAGACCCGGATGTGATCCTGGTGGGCGAGATGCGCGACCTTGAAACCATCAGCC
TGGCCATGAGCGCCGCCGAGACCGGTCACCTGGTCTTCGGCACCCTCCACACCAGTTCCGCGGCCAAGACTGTTGACCGG
ATCATCGACGTCTTCCCCAAGGACGCCCAGGAGCAGGTACGGGCCATGCTGTCAGAGTCGCTCAAGGGGGTCATCAGCCA
GCAGCTCCTGCGCAATGCCGACGGCAAGGGTAGATCGGCGGCCCTGGAAATCATGATGGGAACGCCAGCCATCGGCAACT
TGATCCGCGAAGGAAAGACCTTCCAGATACCTTCCATCATGCAAACGGCAAAGAAAGACGGCATGCAGCTCATGGACCAG
CACATCCTCGACCTGTTGAAGACGAAGAAGGTCTCCCCCGAAGAGGCCTATCGATGCTCCGCCGATAAGAAACAATTCGA
ACAGTACCTGCCCGAACGCCCCCAGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baumannii D1279779 |
54.755 |
97.472 |
0.534 |
| pilT | Acinetobacter baumannii strain A118 |
54.755 |
97.472 |
0.534 |
| pilT | Acinetobacter nosocomialis M2 |
54.755 |
97.472 |
0.534 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.81 |
96.348 |
0.528 |
| pilT | Pseudomonas aeruginosa PAK |
55.255 |
93.539 |
0.517 |
| pilT | Acinetobacter baylyi ADP1 |
56.347 |
90.73 |
0.511 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.683 |
92.978 |
0.508 |
| pilT | Legionella pneumophila strain Lp02 |
54.683 |
92.978 |
0.508 |
| pilT | Vibrio cholerae strain A1552 |
53.916 |
93.258 |
0.503 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
53.916 |
93.258 |
0.503 |
| pilT | Neisseria meningitidis 8013 |
54.799 |
90.73 |
0.497 |
| pilT | Neisseria gonorrhoeae MS11 |
54.489 |
90.73 |
0.494 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.271 |
96.348 |
0.475 |
| pilU | Vibrio cholerae strain A1552 |
41.896 |
91.854 |
0.385 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.94 |
93.539 |
0.374 |