Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FNV58_RS21250 Genome accession   NZ_CP041654
Coordinates   4320575..4322503 (+) Length   642 a.a.
NCBI ID   WP_143613309.1    Uniprot ID   -
Organism   Streptomyces sp. RLB1-9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4315575..4327503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV58_RS21235 (FNV58_21475) - 4316667..4316972 (+) 306 WP_054233549.1 hypothetical protein -
  FNV58_RS21240 (FNV58_21480) - 4317185..4318639 (+) 1455 WP_097284617.1 FGGY family carbohydrate kinase -
  FNV58_RS21245 (FNV58_21485) rcrP 4318842..4320575 (+) 1734 WP_054233616.1 ABC transporter ATP-binding protein Regulator
  FNV58_RS21250 (FNV58_21490) rcrQ 4320575..4322503 (+) 1929 WP_143613309.1 ABC transporter ATP-binding protein Regulator
  FNV58_RS21255 (FNV58_21495) - 4322872..4324188 (-) 1317 WP_143613311.1 RNA polymerase sigma factor -
  FNV58_RS21260 (FNV58_21500) dnaG 4324390..4326294 (-) 1905 WP_054233545.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69520.32 Da        Isoelectric Point: 6.4361

>NTDB_id=327729 FNV58_RS21250 WP_143613309.1 4320575..4322503(+) (rcrQ) [Streptomyces sp. RLB1-9]
MAGPMGRMMAGGGPDQRSMDFKVSGKRLLAQFKPERVTMYGMLVAVVLSVALSVVGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLASMRRRGEGGMADMLAGTDFTPGKGIDFGAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNKTVYHMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPAARPDELRGRVALE
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAANGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=327729 FNV58_RS21250 WP_143613309.1 4320575..4322503(+) (rcrQ) [Streptomyces sp. RLB1-9]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGTGTCCGGGAAGAG
GCTCCTGGCCCAGTTCAAACCCGAGCGCGTCACCATGTACGGAATGCTGGTCGCCGTCGTCCTGAGCGTGGCGCTCTCGG
TGGTCGGACCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGTGCC
ACCAAGGCCGAGGTCCTCGCCTCCATGCGCAGGCGCGGTGAGGGCGGCATGGCCGACATGCTCGCCGGGACGGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGTGCCGTCGGAAACGTACTGCTGCTCGCGCTCTGTACGTTTTTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCACATGCGCGAGGACCTGCAGGCGAAG
CTCTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTGCAGCAGTCGATGGGCCAGCTGGTGAACTCCCTGCTGACCATCATCGGCGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTCGCGCTGGTCGCGCTCGTCACGGTCCCGCTCTCCTTCGTCGTCGCCACGCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCTCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTCGGCGGTCTGCGTGTCGCGTCCGGCTCGCTGTCGATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCGTCCGCGGAGCGCATCTTCGAAC
TCCTCGACGCTGAGGAGCAGGAGGCCGACCCGATGCCGGCGGCGCGCCCCGACGAGCTGCGCGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTGGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTCCTGATGCGGTTCTACGACGTCACCGGCGGCCGGA
TCACCCTCGACGGGGTCGACATCGCGTCCATGTCCCGGGACGAACTCCGGGCCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGTGAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGACCGTTTCATCCGCACGCTCCCCGAGGGCTACGACACCGTCATCGACGACGAGGGGACGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGACGAG
GCGACCAGTTCCGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGGACGTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACACCATCCTCGTGATGGAGAACGGGTCGATCGTCGAGCAGG
GCGCGCATGCGGAGCTGTTGGCGGCGAACGGGGCGTACGCGCGCCTCTACAAGGCCCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.615

96.262

0.391