Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPB8_RS05395 Genome accession   NC_014256
Coordinates   1120962..1122137 (+) Length   391 a.a.
NCBI ID   WP_000060244.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115962..1127137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS05370 (HPB8_1136) - 1116216..1117112 (+) 897 WP_000697521.1 OriC activity response regulator -
  HPB8_RS05375 (HPB8_1140) - 1117428..1118203 (+) 776 Protein_1033 5'-3' exonuclease -
  HPB8_RS05380 (HPB8_1141) - 1118300..1119550 (-) 1251 WP_001199531.1 hypothetical protein -
  HPB8_RS05385 (HPB8_1142) - 1119718..1120584 (+) 867 WP_000045864.1 DnaJ family protein -
  HPB8_RS05390 (HPB8_1143) - 1120594..1120965 (+) 372 WP_000332993.1 heat shock protein transcriptional repressor HspR -
  HPB8_RS05395 (HPB8_1144) rarA 1120962..1122137 (+) 1176 WP_000060244.1 replication-associated recombination protein A Machinery gene
  HPB8_RS05400 (HPB8_1145) fur 1122297..1122749 (+) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  HPB8_RS05405 (HPB8_1146) - 1122769..1123266 (-) 498 WP_000780286.1 DUF2147 domain-containing protein -
  HPB8_RS05410 (HPB8_1147) - 1123263..1123799 (-) 537 WP_000257847.1 YhcH/YjgK/YiaL family protein -
  HPB8_RS05415 (HPB8_1148) fliY 1123829..1124692 (-) 864 WP_001150626.1 flagellar motor switch protein FliY -
  HPB8_RS05420 (HPB8_1149) fliM 1124696..1125760 (-) 1065 WP_000763595.1 flagellar motor switch protein FliM -
  HPB8_RS05425 (HPB8_1150) - 1125753..1126520 (-) 768 WP_000602391.1 RNA polymerase sigma factor FliA -
  HPB8_RS05430 (HPB8_1151) - 1126498..1126812 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43690.26 Da        Isoelectric Point: 8.0462

>NTDB_id=32757 HPB8_RS05395 WP_000060244.1 1120962..1122137(+) (rarA) [Helicobacter pylori B8]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNSSAGDARALLNLLDLSAKVEDPITLETLQSLRPHSLNDGSYSDDTHYNLASALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=32757 HPB8_RS05395 WP_000060244.1 1120962..1122137(+) (rarA) [Helicobacter pylori B8]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTGGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAATTAGAGGATTTGCGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAGCCTGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGTGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTACCTTTTAAACAGCAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAGTAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCCCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTTGCTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCCTTAGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394

Multiple sequence alignment