Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EG882_RS15945 Genome accession   NZ_CP033967
Coordinates   3130485..3131264 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 1B-23     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125485..3136264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS15915 (EG882_15915) fliH 3125529..3126284 (-) 756 WP_015239852.1 flagellar assembly protein FliH -
  EG882_RS15920 (EG882_15920) fliG 3126277..3127293 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  EG882_RS15925 (EG882_15925) fliF 3127306..3128916 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  EG882_RS15930 (EG882_15930) fliE 3128959..3129279 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  EG882_RS15935 (EG882_15935) flgC 3129290..3129742 (-) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  EG882_RS15940 (EG882_15940) flgB 3129742..3130131 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  EG882_RS15945 (EG882_15945) codY 3130485..3131264 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EG882_RS15950 (EG882_15950) hslU 3131302..3132705 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  EG882_RS15955 (EG882_15955) hslV 3132722..3133267 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  EG882_RS15960 (EG882_15960) xerC 3133283..3134200 (-) 918 WP_032871470.1 tyrosine recombinase XerC -
  EG882_RS15965 (EG882_15965) trmFO 3134270..3135577 (-) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=327486 EG882_RS15945 WP_003154263.1 3130485..3131264(-) (codY) [Bacillus velezensis strain 1B-23]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=327486 EG882_RS15945 WP_003154263.1 3130485..3131264(-) (codY) [Bacillus velezensis strain 1B-23]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTTTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment