Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPB8_RS01600 Genome accession   NC_014256
Coordinates   306866..307639 (-) Length   257 a.a.
NCBI ID   WP_000404449.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301866..312639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS01565 (HPB8_332) - 302092..303252 (+) 1161 WP_000944809.1 HP1165 family MFS efflux transporter -
  HPB8_RS01570 (HPB8_333) - 303259..304230 (-) 972 WP_000371801.1 NAD(P)-binding domain-containing protein -
  HPB8_RS01575 (HPB8_334) ccoS 304256..304453 (-) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPB8_RS01580 (HPB8_336) - 304578..305159 (+) 582 WP_001154562.1 DedA family protein -
  HPB8_RS01585 (HPB8_337) - 305250..305744 (+) 495 WP_000516080.1 flavodoxin -
  HPB8_RS01590 (HPB8_338) ybeY 305798..306220 (+) 423 WP_000889532.1 rRNA maturation RNase YbeY -
  HPB8_RS01595 fic 306310..306838 (-) 529 Protein_304 protein adenylyltransferase Fic -
  HPB8_RS01600 (HPB8_341) proC 306866..307639 (-) 774 WP_000404449.1 pyrroline-5-carboxylate reductase Machinery gene
  HPB8_RS01605 (HPB8_342) hopL 307652..311320 (-) 3669 WP_000591328.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28205.01 Da        Isoelectric Point: 9.1275

>NTDB_id=32739 HPB8_RS01600 WP_000404449.1 306866..307639(-) (proC) [Helicobacter pylori B8]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFKALSDAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACQKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=32739 HPB8_RS01600 WP_000404449.1 306866..307639(-) (proC) [Helicobacter pylori B8]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATCACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATAG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTACAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATAAATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGTAAGTTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGCATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGTGTAGCGACAAACGGGAGCGCGCTCGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCAAAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment