Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EB354_RS01190 | Genome accession | NZ_CP033934 |
| Coordinates | 269016..269669 (-) | Length | 217 a.a. |
| NCBI ID | WP_066675465.1 | Uniprot ID | A0A1A7KMW0 |
| Organism | Chryseobacterium balustinum strain KC_1863 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 264016..274669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EB354_RS01175 (EB354_01190) | der | 265250..266560 (+) | 1311 | WP_066678088.1 | ribosome biogenesis GTPase Der | - |
| EB354_RS01180 (EB354_01195) | upp | 266638..267288 (+) | 651 | WP_079464399.1 | uracil phosphoribosyltransferase | - |
| EB354_RS01185 (EB354_01200) | - | 267500..268963 (+) | 1464 | WP_123920683.1 | hypothetical protein | - |
| EB354_RS01190 (EB354_01205) | comF | 269016..269669 (-) | 654 | WP_066675465.1 | phosphoribosyltransferase family protein | Machinery gene |
| EB354_RS01195 (EB354_01210) | - | 269921..271393 (-) | 1473 | WP_079464401.1 | helix-turn-helix transcriptional regulator | - |
| EB354_RS01200 (EB354_01215) | aceB | 271520..273094 (+) | 1575 | WP_079464402.1 | malate synthase A | - |
| EB354_RS01205 (EB354_01220) | aceA | 273206..274486 (+) | 1281 | WP_079464403.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25467.59 Da Isoelectric Point: 8.6173
>NTDB_id=327303 EB354_RS01190 WP_066675465.1 269016..269669(-) (comF) [Chryseobacterium balustinum strain KC_1863]
MILDIFFPNRCIHCNRIIDGNLLVCNVCFEQIHFTHFNFFEDNYILEKCKLLFPIENAFALMQFEKENLSRKIIHELKYK
SREKAGKILAEWTTDRLDFKNQKPDMLVSVPLHPKKLKERGYNQLHLFTETLSRFYEIPFSHDLIKRNNYSKAQALKDKK
HRLESQNTFSIAKNISGKHILLVDDVFTTGNTIASIAWEILKTGDNKVSVLVMAMDE
MILDIFFPNRCIHCNRIIDGNLLVCNVCFEQIHFTHFNFFEDNYILEKCKLLFPIENAFALMQFEKENLSRKIIHELKYK
SREKAGKILAEWTTDRLDFKNQKPDMLVSVPLHPKKLKERGYNQLHLFTETLSRFYEIPFSHDLIKRNNYSKAQALKDKK
HRLESQNTFSIAKNISGKHILLVDDVFTTGNTIASIAWEILKTGDNKVSVLVMAMDE
Nucleotide
Download Length: 654 bp
>NTDB_id=327303 EB354_RS01190 WP_066675465.1 269016..269669(-) (comF) [Chryseobacterium balustinum strain KC_1863]
ATGATTTTAGATATTTTCTTTCCCAATCGTTGCATTCACTGCAACCGGATTATTGACGGCAATTTACTCGTTTGCAATGT
CTGTTTTGAGCAAATTCACTTTACGCATTTCAATTTTTTTGAGGATAATTATATTCTGGAGAAATGTAAACTTCTTTTTC
CTATAGAAAACGCTTTTGCATTAATGCAGTTTGAAAAGGAAAATTTAAGCCGGAAAATCATTCACGAATTAAAATATAAA
AGTCGAGAAAAAGCCGGAAAGATTTTAGCTGAATGGACGACAGATCGTTTAGATTTTAAAAATCAAAAACCTGACATGTT
GGTTTCTGTCCCATTGCATCCGAAGAAACTAAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCGA
GGTTTTATGAGATTCCTTTCAGCCATGATTTAATTAAAAGAAACAATTACTCGAAAGCACAGGCTTTGAAAGATAAGAAG
CATCGTCTAGAAAGTCAGAATACTTTTTCAATCGCTAAAAATATTTCAGGAAAACATATCCTTTTGGTTGATGATGTTTT
TACCACCGGAAATACAATCGCTTCAATTGCCTGGGAAATTTTGAAAACAGGAGACAACAAAGTGAGTGTTTTGGTAATGG
CAATGGATGAATAG
ATGATTTTAGATATTTTCTTTCCCAATCGTTGCATTCACTGCAACCGGATTATTGACGGCAATTTACTCGTTTGCAATGT
CTGTTTTGAGCAAATTCACTTTACGCATTTCAATTTTTTTGAGGATAATTATATTCTGGAGAAATGTAAACTTCTTTTTC
CTATAGAAAACGCTTTTGCATTAATGCAGTTTGAAAAGGAAAATTTAAGCCGGAAAATCATTCACGAATTAAAATATAAA
AGTCGAGAAAAAGCCGGAAAGATTTTAGCTGAATGGACGACAGATCGTTTAGATTTTAAAAATCAAAAACCTGACATGTT
GGTTTCTGTCCCATTGCATCCGAAGAAACTAAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCGA
GGTTTTATGAGATTCCTTTCAGCCATGATTTAATTAAAAGAAACAATTACTCGAAAGCACAGGCTTTGAAAGATAAGAAG
CATCGTCTAGAAAGTCAGAATACTTTTTCAATCGCTAAAAATATTTCAGGAAAACATATCCTTTTGGTTGATGATGTTTT
TACCACCGGAAATACAATCGCTTCAATTGCCTGGGAAATTTTGAAAACAGGAGACAACAAAGTGAGTGTTTTGGTAATGG
CAATGGATGAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
53.917 |
100 |
0.539 |