Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG351_RS10245 | Genome accession | NZ_CP033931 |
| Coordinates | 2250386..2251039 (+) | Length | 217 a.a. |
| NCBI ID | WP_123900497.1 | Uniprot ID | - |
| Organism | Chryseobacterium bernardetii strain H4638 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2245386..2256039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG351_RS10230 (EG351_10355) | aceA | 2245790..2247073 (-) | 1284 | WP_378113024.1 | isocitrate lyase | - |
| EG351_RS10235 (EG351_10360) | aceB | 2247152..2248726 (-) | 1575 | WP_123900495.1 | malate synthase A | - |
| EG351_RS10240 (EG351_10365) | - | 2248853..2250325 (+) | 1473 | WP_123868403.1 | helix-turn-helix domain-containing protein | - |
| EG351_RS10245 (EG351_10370) | comF | 2250386..2251039 (+) | 654 | WP_123900497.1 | ComF family protein | Machinery gene |
| EG351_RS10250 (EG351_10375) | - | 2251159..2251845 (+) | 687 | WP_123900499.1 | alpha/beta fold hydrolase | - |
| EG351_RS10255 (EG351_10380) | upp | 2251848..2252498 (-) | 651 | WP_123900500.1 | uracil phosphoribosyltransferase | - |
| EG351_RS10260 (EG351_10385) | der | 2252652..2253962 (-) | 1311 | WP_123868407.1 | ribosome biogenesis GTPase Der | - |
| EG351_RS10270 (EG351_10395) | - | 2254406..2254930 (-) | 525 | WP_123900502.1 | antirestriction protein ArdA | - |
| EG351_RS10275 (EG351_10400) | - | 2255619..2255942 (+) | 324 | WP_123900504.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25517.53 Da Isoelectric Point: 8.5906
>NTDB_id=327270 EG351_RS10245 WP_123900497.1 2250386..2251039(+) (comF) [Chryseobacterium bernardetii strain H4638]
MILDLLFPNRCLHCNRIIEANLLVCDLCFRQIHFTHYDYSKNNPVKEQCKLFFPVENTYALFQFEEDSLSRKIIHELKYR
NREITGKILAEWTTERLDFKDQKPDLLVSVPLHPKKLRERGYNQLHLYTETLSKYYDIPFDNQLIKRNHYSKAQALKDKK
HRLETVNTFSVTQPITGKHILLIDDVFTTGTTVSSIAWEILNAGKNKVSVLVMAMDV
MILDLLFPNRCLHCNRIIEANLLVCDLCFRQIHFTHYDYSKNNPVKEQCKLFFPVENTYALFQFEEDSLSRKIIHELKYR
NREITGKILAEWTTERLDFKDQKPDLLVSVPLHPKKLRERGYNQLHLYTETLSKYYDIPFDNQLIKRNHYSKAQALKDKK
HRLETVNTFSVTQPITGKHILLIDDVFTTGTTVSSIAWEILNAGKNKVSVLVMAMDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327270 EG351_RS10245 WP_123900497.1 2250386..2251039(+) (comF) [Chryseobacterium bernardetii strain H4638]
ATGATATTAGACTTACTCTTTCCCAACCGCTGCCTTCACTGCAACAGAATTATTGAGGCTAATCTTCTGGTTTGTGACCT
TTGTTTTAGACAGATTCACTTTACGCACTATGATTATTCCAAAAACAATCCGGTTAAAGAACAATGCAAACTCTTTTTCC
CCGTTGAGAATACTTATGCCCTTTTTCAGTTTGAAGAGGACAGTTTAAGCAGGAAAATCATTCATGAACTGAAATACAGA
AATAGAGAAATCACCGGAAAAATACTTGCAGAATGGACTACTGAACGATTGGATTTTAAAGATCAGAAACCAGATCTTTT
GGTAAGTGTTCCGCTTCATCCTAAAAAATTAAGAGAAAGAGGTTATAACCAACTTCATTTATATACAGAAACTCTTTCAA
AATACTATGATATCCCATTTGACAATCAATTAATCAAGAGAAACCATTACTCCAAAGCCCAAGCCCTGAAGGATAAGAAG
CATAGGCTTGAAACGGTTAACACTTTTTCGGTCACCCAGCCAATCACAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACAACAGGAACTACTGTTTCATCTATTGCCTGGGAGATTTTAAATGCCGGTAAGAATAAAGTAAGTGTACTGGTCATGG
CGATGGATGTATAG
ATGATATTAGACTTACTCTTTCCCAACCGCTGCCTTCACTGCAACAGAATTATTGAGGCTAATCTTCTGGTTTGTGACCT
TTGTTTTAGACAGATTCACTTTACGCACTATGATTATTCCAAAAACAATCCGGTTAAAGAACAATGCAAACTCTTTTTCC
CCGTTGAGAATACTTATGCCCTTTTTCAGTTTGAAGAGGACAGTTTAAGCAGGAAAATCATTCATGAACTGAAATACAGA
AATAGAGAAATCACCGGAAAAATACTTGCAGAATGGACTACTGAACGATTGGATTTTAAAGATCAGAAACCAGATCTTTT
GGTAAGTGTTCCGCTTCATCCTAAAAAATTAAGAGAAAGAGGTTATAACCAACTTCATTTATATACAGAAACTCTTTCAA
AATACTATGATATCCCATTTGACAATCAATTAATCAAGAGAAACCATTACTCCAAAGCCCAAGCCCTGAAGGATAAGAAG
CATAGGCTTGAAACGGTTAACACTTTTTCGGTCACCCAGCCAATCACAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACAACAGGAACTACTGTTTCATCTATTGCCTGGGAGATTTTAAATGCCGGTAAGAATAAAGTAAGTGTACTGGTCATGG
CGATGGATGTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
99.539 |
0.507 |