Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG352_RS10895 | Genome accession | NZ_CP033930 |
| Coordinates | 2415257..2415910 (+) | Length | 217 a.a. |
| NCBI ID | WP_061085151.1 | Uniprot ID | - |
| Organism | Chryseobacterium indologenes strain H5559 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2410257..2420910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG352_RS10880 (EG352_10985) | aceA | 2410583..2411863 (-) | 1281 | WP_061085148.1 | isocitrate lyase | - |
| EG352_RS10885 (EG352_10990) | aceB | 2411990..2413564 (-) | 1575 | WP_061085149.1 | malate synthase A | - |
| EG352_RS10890 (EG352_10995) | - | 2413691..2415169 (+) | 1479 | WP_061085150.1 | helix-turn-helix domain-containing protein | - |
| EG352_RS10895 (EG352_11000) | comF | 2415257..2415910 (+) | 654 | WP_061085151.1 | ComF family protein | Machinery gene |
| EG352_RS10900 (EG352_11005) | - | 2416032..2416718 (+) | 687 | WP_061085152.1 | alpha/beta fold hydrolase | - |
| EG352_RS10905 (EG352_11010) | upp | 2416720..2417370 (-) | 651 | WP_061085153.1 | uracil phosphoribosyltransferase | - |
| EG352_RS10910 (EG352_11015) | der | 2417525..2418835 (-) | 1311 | WP_027374736.1 | ribosome biogenesis GTPase Der | - |
| EG352_RS10920 (EG352_11025) | - | 2419763..2420680 (+) | 918 | WP_123861721.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25444.44 Da Isoelectric Point: 8.0805
>NTDB_id=327251 EG352_RS10895 WP_061085151.1 2415257..2415910(+) (comF) [Chryseobacterium indologenes strain H5559]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQSVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQSVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327251 EG352_RS10895 WP_061085151.1 2415257..2415910(+) (comF) [Chryseobacterium indologenes strain H5559]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTGAATACCTTTTCTTTAACCCAATCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTGAATACCTTTTCTTTAACCCAATCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.389 |
99.539 |
0.512 |