Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG340_RS16250 | Genome accession | NZ_CP033928 |
| Coordinates | 3505677..3506330 (-) | Length | 217 a.a. |
| NCBI ID | WP_123886949.1 | Uniprot ID | - |
| Organism | Chryseobacterium indoltheticum strain G0211 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3500677..3511330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG340_RS16235 (EG340_16385) | katG | 3501021..3503300 (+) | 2280 | WP_123886947.1 | catalase/peroxidase HPI | - |
| EG340_RS16240 (EG340_16390) | der | 3503559..3504869 (+) | 1311 | WP_076561016.1 | ribosome biogenesis GTPase Der | - |
| EG340_RS16245 (EG340_16395) | upp | 3504948..3505598 (+) | 651 | WP_123886948.1 | uracil phosphoribosyltransferase | - |
| EG340_RS16250 (EG340_16400) | comF | 3505677..3506330 (-) | 654 | WP_123886949.1 | ComF family protein | Machinery gene |
| EG340_RS16255 (EG340_16405) | - | 3506598..3508070 (-) | 1473 | WP_123886950.1 | helix-turn-helix domain-containing protein | - |
| EG340_RS16260 (EG340_16410) | aceB | 3508197..3509771 (+) | 1575 | WP_123886951.1 | malate synthase A | - |
| EG340_RS16265 (EG340_16415) | aceA | 3509905..3511185 (+) | 1281 | WP_123886952.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25629.85 Da Isoelectric Point: 8.8752
>NTDB_id=327228 EG340_RS16250 WP_123886949.1 3505677..3506330(-) (comF) [Chryseobacterium indoltheticum strain G0211]
MILDIFFPNRCIHCNRIIDGDLLVCNICFEQIHFTHFNFFEENYIKEKCKLLFPIENAFALMKFEKENLSRKIIHELKYK
SRQKAGKILAEWTAERLDFKKEKPDVLVSVPLHPKKLKERGYNQLHLFTETLSKFYEIPFSHNLIKRNHYSKAQALKDKQ
HRLETRNTFSITENITDKHILLIDDVFTTGNTLASIAWEILKTGNNKVSVLVMAMDE
MILDIFFPNRCIHCNRIIDGDLLVCNICFEQIHFTHFNFFEENYIKEKCKLLFPIENAFALMKFEKENLSRKIIHELKYK
SRQKAGKILAEWTAERLDFKKEKPDVLVSVPLHPKKLKERGYNQLHLFTETLSKFYEIPFSHNLIKRNHYSKAQALKDKQ
HRLETRNTFSITENITDKHILLIDDVFTTGNTLASIAWEILKTGNNKVSVLVMAMDE
Nucleotide
Download Length: 654 bp
>NTDB_id=327228 EG340_RS16250 WP_123886949.1 3505677..3506330(-) (comF) [Chryseobacterium indoltheticum strain G0211]
ATGATTTTAGATATTTTCTTTCCGAATCGTTGCATTCATTGCAACCGAATTATTGACGGTGATTTACTCGTTTGCAATAT
CTGTTTTGAACAAATTCATTTTACGCATTTTAATTTTTTTGAGGAAAATTATATTAAAGAGAAATGTAAACTTCTTTTTC
CTATCGAAAATGCTTTTGCATTAATGAAGTTTGAAAAGGAAAATTTAAGTAGAAAAATCATTCATGAATTAAAATATAAA
AGCCGTCAAAAAGCCGGAAAGATTTTGGCAGAATGGACAGCGGAGCGTTTAGATTTCAAAAAAGAAAAACCTGATGTGTT
GGTTTCTGTTCCATTGCATCCGAAGAAGCTGAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCGA
AGTTTTATGAGATTCCTTTTAGTCATAATTTAATTAAAAGAAATCATTACTCAAAAGCTCAGGCATTGAAAGACAAGCAA
CATCGTCTGGAAACTCGGAATACTTTTTCAATTACCGAAAACATTACAGATAAACATATTTTATTGATCGATGATGTTTT
CACAACAGGAAATACGTTGGCTTCAATTGCTTGGGAAATCCTGAAAACAGGAAATAATAAAGTGAGTGTTTTGGTAATGG
CGATGGATGAGTAA
ATGATTTTAGATATTTTCTTTCCGAATCGTTGCATTCATTGCAACCGAATTATTGACGGTGATTTACTCGTTTGCAATAT
CTGTTTTGAACAAATTCATTTTACGCATTTTAATTTTTTTGAGGAAAATTATATTAAAGAGAAATGTAAACTTCTTTTTC
CTATCGAAAATGCTTTTGCATTAATGAAGTTTGAAAAGGAAAATTTAAGTAGAAAAATCATTCATGAATTAAAATATAAA
AGCCGTCAAAAAGCCGGAAAGATTTTGGCAGAATGGACAGCGGAGCGTTTAGATTTCAAAAAAGAAAAACCTGATGTGTT
GGTTTCTGTTCCATTGCATCCGAAGAAGCTGAAGGAAAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCGA
AGTTTTATGAGATTCCTTTTAGTCATAATTTAATTAAAAGAAATCATTACTCAAAAGCTCAGGCATTGAAAGACAAGCAA
CATCGTCTGGAAACTCGGAATACTTTTTCAATTACCGAAAACATTACAGATAAACATATTTTATTGATCGATGATGTTTT
CACAACAGGAAATACGTTGGCTTCAATTGCTTGGGAAATCCTGAAAACAGGAAATAATAAAGTGAGTGTTTTGGTAATGG
CGATGGATGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
54.378 |
100 |
0.544 |