Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG341_RS16760 | Genome accession | NZ_CP033925 |
| Coordinates | 3669962..3670615 (+) | Length | 217 a.a. |
| NCBI ID | WP_103293906.1 | Uniprot ID | A0A3G6RKR1 |
| Organism | Chryseobacterium lactis strain G0197 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3664962..3675615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG341_RS16745 (EG341_16940) | aceA | 3665316..3666596 (-) | 1281 | WP_103293909.1 | isocitrate lyase | - |
| EG341_RS16750 (EG341_16945) | aceB | 3666682..3668256 (-) | 1575 | WP_103293908.1 | malate synthase A | - |
| EG341_RS16755 (EG341_16950) | - | 3668383..3669861 (+) | 1479 | WP_103293907.1 | helix-turn-helix domain-containing protein | - |
| EG341_RS16760 (EG341_16955) | comF | 3669962..3670615 (+) | 654 | WP_103293906.1 | ComF family protein | Machinery gene |
| EG341_RS16765 (EG341_16960) | - | 3670775..3671461 (+) | 687 | WP_103293905.1 | alpha/beta fold hydrolase | - |
| EG341_RS16770 (EG341_16965) | upp | 3671463..3672113 (-) | 651 | WP_103293904.1 | uracil phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25194.18 Da Isoelectric Point: 7.5068
>NTDB_id=327186 EG341_RS16760 WP_103293906.1 3669962..3670615(+) (comF) [Chryseobacterium lactis strain G0197]
MILDLLFPNRCIHCNRIIDPEVLVCDLCCNQIHFTHYDYFESNPITEKCKLLFPVEHTYALIQFEKENLSRNIIHELKYR
SREKIGKILAEWVTERLDFKNHKPDLLVSVPLHPKKLKERGYNQLHLFTETLAEFYQIPFDHELIQRNHYSKAQALKDKK
HRLAAGNAFSITKPITGKHIVLIDDVFTTGNTVSSIAWEILNAGDNKVSVLVMAVDA
MILDLLFPNRCIHCNRIIDPEVLVCDLCCNQIHFTHYDYFESNPITEKCKLLFPVEHTYALIQFEKENLSRNIIHELKYR
SREKIGKILAEWVTERLDFKNHKPDLLVSVPLHPKKLKERGYNQLHLFTETLAEFYQIPFDHELIQRNHYSKAQALKDKK
HRLAAGNAFSITKPITGKHIVLIDDVFTTGNTVSSIAWEILNAGDNKVSVLVMAVDA
Nucleotide
Download Length: 654 bp
>NTDB_id=327186 EG341_RS16760 WP_103293906.1 3669962..3670615(+) (comF) [Chryseobacterium lactis strain G0197]
ATGATACTGGACTTATTGTTTCCTAACCGCTGCATTCATTGCAACAGGATTATTGATCCTGAAGTATTGGTATGTGATCT
ATGCTGTAACCAGATTCATTTTACACATTATGATTATTTTGAAAGTAATCCAATCACTGAGAAATGTAAATTACTCTTTC
CCGTGGAACATACCTATGCTTTAATTCAATTTGAAAAGGAAAATTTAAGCCGTAACATCATCCACGAACTGAAATACAGA
AGCAGAGAAAAAATCGGAAAAATTCTCGCGGAGTGGGTCACAGAACGTCTGGACTTTAAAAATCACAAGCCTGATCTGCT
GGTAAGTGTACCGCTTCATCCAAAGAAATTAAAGGAAAGAGGCTACAACCAGCTTCATCTGTTTACGGAAACTCTGGCTG
AGTTTTATCAAATCCCGTTTGATCATGAACTTATTCAGAGAAATCATTATTCAAAAGCACAGGCTTTAAAAGATAAAAAG
CACAGGCTGGCAGCAGGTAATGCATTTTCCATTACAAAACCTATAACCGGAAAACATATTGTTCTGATTGATGATGTCTT
CACGACAGGAAATACCGTTTCATCTATTGCGTGGGAAATTTTAAATGCCGGTGACAATAAAGTAAGCGTATTGGTAATGG
CGGTAGATGCATAA
ATGATACTGGACTTATTGTTTCCTAACCGCTGCATTCATTGCAACAGGATTATTGATCCTGAAGTATTGGTATGTGATCT
ATGCTGTAACCAGATTCATTTTACACATTATGATTATTTTGAAAGTAATCCAATCACTGAGAAATGTAAATTACTCTTTC
CCGTGGAACATACCTATGCTTTAATTCAATTTGAAAAGGAAAATTTAAGCCGTAACATCATCCACGAACTGAAATACAGA
AGCAGAGAAAAAATCGGAAAAATTCTCGCGGAGTGGGTCACAGAACGTCTGGACTTTAAAAATCACAAGCCTGATCTGCT
GGTAAGTGTACCGCTTCATCCAAAGAAATTAAAGGAAAGAGGCTACAACCAGCTTCATCTGTTTACGGAAACTCTGGCTG
AGTTTTATCAAATCCCGTTTGATCATGAACTTATTCAGAGAAATCATTATTCAAAAGCACAGGCTTTAAAAGATAAAAAG
CACAGGCTGGCAGCAGGTAATGCATTTTCCATTACAAAACCTATAACCGGAAAACATATTGTTCTGATTGATGATGTCTT
CACGACAGGAAATACCGTTTCATCTATTGCGTGGGAAATTTTAAATGCCGGTGACAATAAAGTAAGCGTATTGGTAATGG
CGGTAGATGCATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
99.539 |
0.507 |