Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG342_RS00830 | Genome accession | NZ_CP033924 |
| Coordinates | 166637..167290 (+) | Length | 217 a.a. |
| NCBI ID | WP_103293906.1 | Uniprot ID | A0A3G6RKR1 |
| Organism | Chryseobacterium lactis strain KC_1864 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 161637..172290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG342_RS00815 (EG342_00815) | aceA | 161991..163271 (-) | 1281 | WP_103293909.1 | isocitrate lyase | - |
| EG342_RS00820 (EG342_00820) | aceB | 163357..164931 (-) | 1575 | WP_103293908.1 | malate synthase A | - |
| EG342_RS00825 (EG342_00825) | - | 165058..166536 (+) | 1479 | WP_103293907.1 | helix-turn-helix domain-containing protein | - |
| EG342_RS00830 (EG342_00830) | comF | 166637..167290 (+) | 654 | WP_103293906.1 | ComF family protein | Machinery gene |
| EG342_RS00835 (EG342_00835) | - | 167450..168136 (+) | 687 | WP_103293905.1 | alpha/beta fold hydrolase | - |
| EG342_RS00840 (EG342_00840) | upp | 168138..168788 (-) | 651 | WP_103293904.1 | uracil phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25194.18 Da Isoelectric Point: 7.5068
>NTDB_id=327165 EG342_RS00830 WP_103293906.1 166637..167290(+) (comF) [Chryseobacterium lactis strain KC_1864]
MILDLLFPNRCIHCNRIIDPEVLVCDLCCNQIHFTHYDYFESNPITEKCKLLFPVEHTYALIQFEKENLSRNIIHELKYR
SREKIGKILAEWVTERLDFKNHKPDLLVSVPLHPKKLKERGYNQLHLFTETLAEFYQIPFDHELIQRNHYSKAQALKDKK
HRLAAGNAFSITKPITGKHIVLIDDVFTTGNTVSSIAWEILNAGDNKVSVLVMAVDA
MILDLLFPNRCIHCNRIIDPEVLVCDLCCNQIHFTHYDYFESNPITEKCKLLFPVEHTYALIQFEKENLSRNIIHELKYR
SREKIGKILAEWVTERLDFKNHKPDLLVSVPLHPKKLKERGYNQLHLFTETLAEFYQIPFDHELIQRNHYSKAQALKDKK
HRLAAGNAFSITKPITGKHIVLIDDVFTTGNTVSSIAWEILNAGDNKVSVLVMAVDA
Nucleotide
Download Length: 654 bp
>NTDB_id=327165 EG342_RS00830 WP_103293906.1 166637..167290(+) (comF) [Chryseobacterium lactis strain KC_1864]
ATGATACTGGACTTATTGTTTCCTAACCGCTGCATTCATTGCAACAGGATTATTGATCCTGAAGTATTGGTATGTGATCT
ATGCTGTAACCAGATTCATTTTACACATTATGATTATTTTGAAAGTAATCCAATCACTGAGAAATGTAAATTACTCTTTC
CCGTGGAACATACCTATGCTTTAATTCAATTTGAAAAGGAAAATTTAAGCCGTAACATCATCCACGAACTGAAATACAGA
AGCAGAGAAAAAATCGGAAAAATTCTCGCGGAGTGGGTCACAGAACGTCTGGACTTTAAAAATCACAAGCCTGATCTGCT
GGTAAGTGTACCGCTTCATCCAAAGAAATTAAAGGAAAGAGGCTACAACCAGCTTCATCTGTTTACGGAAACTCTGGCTG
AGTTTTATCAAATCCCGTTTGATCATGAACTTATTCAGAGAAATCATTATTCAAAAGCACAGGCTTTAAAAGATAAAAAG
CACAGGCTGGCAGCAGGTAATGCATTTTCCATTACAAAACCTATAACCGGAAAACATATTGTTCTGATTGATGATGTCTT
CACGACAGGAAATACCGTTTCATCTATTGCGTGGGAAATTTTAAATGCCGGTGACAATAAAGTAAGCGTATTGGTAATGG
CGGTAGATGCATAA
ATGATACTGGACTTATTGTTTCCTAACCGCTGCATTCATTGCAACAGGATTATTGATCCTGAAGTATTGGTATGTGATCT
ATGCTGTAACCAGATTCATTTTACACATTATGATTATTTTGAAAGTAATCCAATCACTGAGAAATGTAAATTACTCTTTC
CCGTGGAACATACCTATGCTTTAATTCAATTTGAAAAGGAAAATTTAAGCCGTAACATCATCCACGAACTGAAATACAGA
AGCAGAGAAAAAATCGGAAAAATTCTCGCGGAGTGGGTCACAGAACGTCTGGACTTTAAAAATCACAAGCCTGATCTGCT
GGTAAGTGTACCGCTTCATCCAAAGAAATTAAAGGAAAGAGGCTACAACCAGCTTCATCTGTTTACGGAAACTCTGGCTG
AGTTTTATCAAATCCCGTTTGATCATGAACTTATTCAGAGAAATCATTATTCAAAAGCACAGGCTTTAAAAGATAAAAAG
CACAGGCTGGCAGCAGGTAATGCATTTTCCATTACAAAACCTATAACCGGAAAACATATTGTTCTGATTGATGATGTCTT
CACGACAGGAAATACCGTTTCATCTATTGCGTGGGAAATTTTAAATGCCGGTGACAATAAAGTAAGCGTATTGGTAATGG
CGGTAGATGCATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.926 |
99.539 |
0.507 |