Detailed information NTG0327143

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EG344_RS15600
• Genome accession: NZ_CP033922
• Coordinates: 3455654..3456307 (-)
• Length: 217 a.a.
• NCBI ID: WP_123910199.1
• Uniprot ID: A0A3G6RZ25
• Organism: Chryseobacterium sp. G0162
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3450654..3461307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG344_RS15590 (EG344_15720)	upp	3454178..3454828 (+)	651	WP_123910197.1	uracil phosphoribosyltransferase	-
EG344_RS15595 (EG344_15725)	-	3454831..3455517 (-)	687	WP_123910198.1	alpha/beta fold hydrolase	-
EG344_RS15600 (EG344_15730)	comF	3455654..3456307 (-)	654	WP_123910199.1	ComF family protein	Machinery gene
EG344_RS15605 (EG344_15735)	-	3456366..3457838 (-)	1473	WP_123910200.1	helix-turn-helix domain-containing protein	-
EG344_RS15610 (EG344_15740)	aceB	3457966..3459540 (+)	1575	WP_123910201.1	malate synthase A	-
EG344_RS15615 (EG344_15745)	aceA	3459659..3460939 (+)	1281	WP_123910202.1	isocitrate lyase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25453.42 Da
• Isoelectric Point: 7.7422

>NTDB_id=327143 EG344_RS15600 WP_123910199.1 3455654..3456307(-) (comF) [Chryseobacterium sp. G0162]
MILDLLFPNRCLHCNRIIESDLLICDLCFGQVHFTHYNYFENNPVKEKCKLLFPVENTYALIQFEEDSLSRKIIHELKYR
NREITGKIIAEWTTERLDFKDQKPDLLVSVPLHPKKQRERGYNQLHLYTETLSKYYEIPFNHQIIKRNYYSKAQALKNKK
LRLETINTFSITQSITGKHILLIDDVFTTGTTISSIAWEILNAGDNTVSVLVIAMDV

Nucleotide

• Length: 654 bp

>NTDB_id=327143 EG344_RS15600 WP_123910199.1 3455654..3456307(-) (comF) [Chryseobacterium sp. G0162]
ATGATATTAGATCTGCTCTTTCCCAACCGGTGCCTTCATTGTAATAGAATTATTGAGAGTGATCTCTTAATATGTGATCT
ATGTTTTGGTCAAGTTCATTTTACACACTACAATTATTTCGAAAATAATCCAGTAAAGGAAAAATGCAAACTTCTTTTTC
CTGTTGAAAACACTTATGCCCTTATTCAGTTTGAGGAAGATAGCTTAAGCCGAAAAATTATTCATGAATTAAAATACAGA
AACAGAGAAATTACAGGAAAAATTATTGCAGAATGGACTACCGAGCGATTGGATTTTAAAGATCAAAAACCGGATCTTCT
GGTCAGCGTTCCTCTTCACCCTAAAAAACAGAGAGAAAGAGGTTATAATCAGCTTCATTTGTATACAGAAACCCTTTCAA
AATATTATGAAATCCCGTTTAATCATCAAATCATCAAGAGAAACTACTATTCCAAAGCCCAAGCGCTAAAGAATAAGAAG
CTTAGATTGGAAACGATCAATACCTTTTCGATTACCCAATCTATAACGGGAAAGCATATTCTGCTCATTGATGATGTTTT
TACAACAGGAACTACGATTTCCTCTATTGCCTGGGAGATTTTAAATGCCGGAGATAATACGGTGAGTGTCCTGGTGATAG
CAATGGATGTATAG

Domains

Predicted by InterProScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.463	99.539	0.502