Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG345_RS01980 | Genome accession | NZ_CP033921 |
| Coordinates | 451991..452644 (-) | Length | 217 a.a. |
| NCBI ID | WP_073335223.1 | Uniprot ID | A0A1M7KQ65 |
| Organism | Chryseobacterium carnipullorum strain F9942 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 446991..457644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG345_RS25460 | - | 447023..447344 (+) | 322 | Protein_389 | RHS repeat-associated core domain-containing protein | - |
| EG345_RS01955 (EG345_01980) | - | 448018..448380 (+) | 363 | WP_073335226.1 | hypothetical protein | - |
| EG345_RS01965 (EG345_01990) | der | 449077..450387 (+) | 1311 | WP_047450295.1 | ribosome biogenesis GTPase Der | - |
| EG345_RS01970 (EG345_01995) | upp | 450471..451124 (+) | 654 | WP_073335225.1 | uracil phosphoribosyltransferase | - |
| EG345_RS01975 (EG345_02000) | - | 451130..451819 (-) | 690 | WP_123878637.1 | alpha/beta fold hydrolase | - |
| EG345_RS01980 (EG345_02005) | comF | 451991..452644 (-) | 654 | WP_073335223.1 | ComF family protein | Machinery gene |
| EG345_RS01985 (EG345_02010) | - | 452770..454254 (-) | 1485 | WP_123878639.1 | helix-turn-helix domain-containing protein | - |
| EG345_RS01990 (EG345_02015) | aceB | 454380..455957 (+) | 1578 | WP_123878641.1 | malate synthase A | - |
| EG345_RS01995 (EG345_02020) | aceA | 456163..457446 (+) | 1284 | WP_394343281.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25189.92 Da Isoelectric Point: 6.8206
>NTDB_id=327117 EG345_RS01980 WP_073335223.1 451991..452644(-) (comF) [Chryseobacterium carnipullorum strain F9942]
MILDLFFPNRCIECSRIIDSDLLVCSLCFEQIHFTHFDYSGDNIIREKCKLLFPIENTYALMRFEQDSLSQKIIHELKYK
SRENAGKTLAEWTKERLNFNEEKPDILVSVPLHPKKLKERGYNQLHVFTETLSTFYHIPFDHELIQRNHYSKAQALKDKQ
HRLETTNPFSLSKSISGKHILLIDDVFTTGSTVSSIAWEILNAGDNKVSVLVMAVDV
MILDLFFPNRCIECSRIIDSDLLVCSLCFEQIHFTHFDYSGDNIIREKCKLLFPIENTYALMRFEQDSLSQKIIHELKYK
SRENAGKTLAEWTKERLNFNEEKPDILVSVPLHPKKLKERGYNQLHVFTETLSTFYHIPFDHELIQRNHYSKAQALKDKQ
HRLETTNPFSLSKSISGKHILLIDDVFTTGSTVSSIAWEILNAGDNKVSVLVMAVDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327117 EG345_RS01980 WP_073335223.1 451991..452644(-) (comF) [Chryseobacterium carnipullorum strain F9942]
ATGATATTAGATTTATTTTTTCCCAACCGCTGTATTGAATGTAGCCGGATCATAGATTCAGATCTTTTGGTTTGCAGTTT
ATGTTTTGAACAGATTCATTTTACTCATTTTGACTATTCTGGTGATAACATCATTAGAGAAAAATGCAAACTTTTGTTTC
CCATTGAAAATACCTATGCCCTGATGAGGTTTGAGCAGGATAGTTTAAGTCAAAAGATTATCCACGAACTGAAATATAAA
AGCAGGGAAAATGCCGGTAAAACTCTTGCCGAATGGACCAAGGAACGTTTGAATTTCAATGAAGAAAAACCAGATATTCT
GGTATCTGTTCCGCTTCATCCTAAAAAATTAAAGGAACGGGGCTATAACCAACTGCATGTATTTACAGAAACATTGTCGA
CGTTTTATCATATCCCATTTGACCACGAATTGATCCAAAGAAATCACTATTCAAAAGCACAGGCCTTAAAGGATAAACAA
CACCGTTTGGAAACAACGAATCCATTTTCTCTTTCAAAGTCAATTTCGGGAAAGCATATTCTTTTGATTGATGATGTTTT
CACGACGGGAAGTACTGTTTCATCTATTGCCTGGGAAATTTTAAATGCAGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CAGTGGATGTTTAG
ATGATATTAGATTTATTTTTTCCCAACCGCTGTATTGAATGTAGCCGGATCATAGATTCAGATCTTTTGGTTTGCAGTTT
ATGTTTTGAACAGATTCATTTTACTCATTTTGACTATTCTGGTGATAACATCATTAGAGAAAAATGCAAACTTTTGTTTC
CCATTGAAAATACCTATGCCCTGATGAGGTTTGAGCAGGATAGTTTAAGTCAAAAGATTATCCACGAACTGAAATATAAA
AGCAGGGAAAATGCCGGTAAAACTCTTGCCGAATGGACCAAGGAACGTTTGAATTTCAATGAAGAAAAACCAGATATTCT
GGTATCTGTTCCGCTTCATCCTAAAAAATTAAAGGAACGGGGCTATAACCAACTGCATGTATTTACAGAAACATTGTCGA
CGTTTTATCATATCCCATTTGACCACGAATTGATCCAAAGAAATCACTATTCAAAAGCACAGGCCTTAAAGGATAAACAA
CACCGTTTGGAAACAACGAATCCATTTTCTCTTTCAAAGTCAATTTCGGGAAAGCATATTCTTTTGATTGATGATGTTTT
CACGACGGGAAGTACTGTTTCATCTATTGCCTGGGAAATTTTAAATGCAGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CAGTGGATGTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.852 |
99.539 |
0.516 |