Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EG353_RS06200 Genome accession   NZ_CP033912
Coordinates   1420744..1421397 (+) Length   217 a.a.
NCBI ID   WP_123852448.1    Uniprot ID   A0A3G6MS02
Organism   Chryseobacterium shandongense strain H5143     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415744..1426397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG353_RS06170 (EG353_06225) aqpZ 1416244..1416960 (+) 717 WP_123855505.1 aquaporin Z -
  EG353_RS06175 (EG353_06230) - 1417035..1417580 (-) 546 WP_123854239.1 hypothetical protein -
  EG353_RS06180 (EG353_06235) - 1417733..1418713 (-) 981 WP_123854240.1 acyl transferase -
  EG353_RS06185 (EG353_06240) - 1418888..1419679 (-) 792 WP_123854241.1 UDP-2,3-diacylglucosamine diphosphatase -
  EG353_RS06190 (EG353_06245) - 1419703..1420149 (-) 447 WP_066433447.1 6-carboxytetrahydropterin synthase -
  EG353_RS06195 (EG353_06250) - 1420230..1420613 (-) 384 WP_123852447.1 thioesterase family protein -
  EG353_RS06200 (EG353_06255) comF 1420744..1421397 (+) 654 WP_123852448.1 ComF family protein Machinery gene
  EG353_RS06205 (EG353_06260) - 1421498..1422187 (+) 690 WP_123854242.1 alpha/beta fold hydrolase -
  EG353_RS06210 (EG353_06265) upp 1422176..1422829 (-) 654 WP_066433430.1 uracil phosphoribosyltransferase -
  EG353_RS06215 (EG353_06270) der 1422908..1424218 (-) 1311 WP_066433428.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25223.33 Da        Isoelectric Point: 8.3427

>NTDB_id=327017 EG353_RS06200 WP_123852448.1 1420744..1421397(+) (comF) [Chryseobacterium shandongense strain H5143]
MIFDILFPNRCLGCHGIISADLLVCELCFSRIDFVHSGYFDNNFIKERCKLLFPVENTFALMQFEKENLSRKIIHELKYK
SREKAGEILAEWTMERLDFKDRKPDLLVSVPLHPKKLKERGYNQLHTFTEKLSEFYGIPFDHDLIKRNQYSKAQALKDKQ
NRLKSENVFSITKSITQKNILLIDDVFTTGNTIASIAWEILKAGNNTVNVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=327017 EG353_RS06200 WP_123852448.1 1420744..1421397(+) (comF) [Chryseobacterium shandongense strain H5143]
ATGATTTTTGATATTTTATTTCCTAACCGATGCCTGGGCTGCCATGGCATTATTTCGGCTGATCTTCTGGTCTGTGAATT
GTGTTTCAGCCGTATTGATTTCGTCCATTCCGGTTATTTTGACAATAATTTCATCAAAGAAAGATGCAAACTTCTTTTTC
CTGTTGAAAACACTTTTGCTTTGATGCAGTTTGAAAAAGAAAATCTCAGCAGGAAAATTATTCATGAATTAAAATACAAA
AGCCGGGAGAAGGCCGGAGAAATTTTGGCGGAGTGGACCATGGAGCGACTTGATTTCAAAGACCGAAAGCCTGATTTGCT
GGTTTCCGTCCCGCTTCATCCCAAAAAGCTTAAAGAAAGAGGATACAATCAACTGCACACATTTACTGAAAAGCTTTCTG
AGTTTTATGGAATTCCTTTTGACCATGATTTGATTAAAAGAAATCAGTATTCAAAAGCGCAGGCCCTAAAAGATAAACAG
AACCGTTTAAAATCAGAAAATGTATTTTCTATCACCAAAAGCATAACGCAAAAAAATATACTTCTTATTGATGACGTTTT
CACTACCGGAAATACGATTGCTTCTATCGCGTGGGAGATTCTTAAAGCGGGTAACAATACCGTTAATGTGCTGGTAATGG
CGATGGATGTGTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6MS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50

99.539

0.498

Multiple sequence alignment