Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EGY07_RS02530 | Genome accession | NZ_CP033828 |
| Coordinates | 607584..608237 (-) | Length | 217 a.a. |
| NCBI ID | WP_027374733.1 | Uniprot ID | - |
| Organism | Chryseobacterium indologenes strain FDAARGOS_510 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 602584..613237
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGY07_RS02515 (EGY07_02530) | der | 604651..605961 (+) | 1311 | WP_027374736.1 | ribosome biogenesis GTPase Der | - |
| EGY07_RS02520 (EGY07_02535) | upp | 606117..606767 (+) | 651 | WP_123865058.1 | uracil phosphoribosyltransferase | - |
| EGY07_RS02525 (EGY07_02540) | - | 606769..607455 (-) | 687 | WP_123865059.1 | alpha/beta fold hydrolase | - |
| EGY07_RS02530 (EGY07_02545) | comF | 607584..608237 (-) | 654 | WP_027374733.1 | ComF family protein | Machinery gene |
| EGY07_RS02535 (EGY07_02550) | - | 608325..609803 (-) | 1479 | WP_061085150.1 | helix-turn-helix domain-containing protein | - |
| EGY07_RS02540 (EGY07_02555) | aceB | 609930..611504 (+) | 1575 | WP_061085149.1 | malate synthase A | - |
| EGY07_RS02545 (EGY07_02560) | aceA | 611617..612897 (+) | 1281 | WP_027374730.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25454.48 Da Isoelectric Point: 8.0805
>NTDB_id=326172 EGY07_RS02530 WP_027374733.1 607584..608237(-) (comF) [Chryseobacterium indologenes strain FDAARGOS_510]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
Nucleotide
Download Length: 654 bp
>NTDB_id=326172 EGY07_RS02530 WP_027374733.1 607584..608237(-) (comF) [Chryseobacterium indologenes strain FDAARGOS_510]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.389 |
99.539 |
0.512 |