Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FNE85_RS03810 Genome accession   NZ_CP041425
Coordinates   780403..780879 (-) Length   158 a.a.
NCBI ID   WP_001186784.1    Uniprot ID   -
Organism   Escherichia coli strain STEC388     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775403..785879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE85_RS03770 (FNE85_03820) yghD 776127..776663 (+) 537 WP_032294391.1 GspM family type II secretion system protein YghD -
  FNE85_RS03775 (FNE85_03825) - 776944..777786 (-) 843 WP_001290183.1 DUF4942 domain-containing protein -
  FNE85_RS03780 (FNE85_03830) - 777871..778068 (-) 198 WP_001374283.1 DUF957 domain-containing protein -
  FNE85_RS03785 (FNE85_03835) - 778080..778568 (-) 489 WP_000779171.1 DUF5983 family protein -
  FNE85_RS03790 (FNE85_03840) cbtA 778565..778942 (-) 378 WP_000854800.1 TA system toxin CbtA family protein -
  FNE85_RS03795 (FNE85_03845) - 779032..779400 (-) 369 WP_032178229.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FNE85_RS03800 (FNE85_03850) - 779450..780094 (-) 645 WP_161623591.1 antitoxin of toxin-antitoxin stability system -
  FNE85_RS03805 (FNE85_03855) yeeT 780113..780334 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  FNE85_RS03810 (FNE85_03860) radC 780403..780879 (-) 477 WP_001186784.1 RadC family protein Machinery gene
  FNE85_RS03815 (FNE85_03865) - 780894..781379 (-) 486 WP_000213706.1 antirestriction protein -
  FNE85_RS25720 - 781471..781638 (-) 168 Protein_757 DUF945 domain-containing protein -
  FNE85_RS03820 (FNE85_03870) - 781670..783241 (-) 1572 WP_161623572.1 IS66-like element ISCro1 family transposase -
  FNE85_RS03825 (FNE85_03875) tnpB 783261..783608 (-) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  FNE85_RS03830 (FNE85_03880) tnpA 783608..784285 (-) 678 WP_096101123.1 IS66-like element accessory protein TnpA -
  FNE85_RS03835 (FNE85_03885) - 784340..784996 (-) 657 Protein_761 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.46 Da        Isoelectric Point: 7.2519

>NTDB_id=326172 FNE85_RS03810 WP_001186784.1 780403..780879(-) (radC) [Escherichia coli strain STEC388]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALAMVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=326172 FNE85_RS03810 WP_001186784.1 780403..780879(-) (radC) [Escherichia coli strain STEC388]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACAACCAGAGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAGGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTACAGGCACTGGCCATGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment