Detailed information NTG0325969

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EGY05_RS16985
• Genome accession: NZ_CP033811
• Coordinates: 3722219..3722872 (+)
• Length: 217 a.a.
• NCBI ID: WP_123843295.1
• Uniprot ID: -
• Organism: Chryseobacterium arthrosphaerae strain FDAARGOS_519
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3717219..3727872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY05_RS16970 (EGY05_17205)	aceA	3717534..3718814 (-)	1281	WP_123843292.1	isocitrate lyase	-
EGY05_RS16975 (EGY05_17210)	aceB	3718910..3720484 (-)	1575	WP_123843293.1	malate synthase A	-
EGY05_RS16980 (EGY05_17215)	-	3720611..3722086 (+)	1476	WP_123843294.1	helix-turn-helix domain-containing protein	-
EGY05_RS16985 (EGY05_17220)	comF	3722219..3722872 (+)	654	WP_123843295.1	ComF family protein	Machinery gene
EGY05_RS16990 (EGY05_17225)	-	3722984..3723670 (+)	687	WP_123843296.1	alpha/beta fold hydrolase	-
EGY05_RS16995 (EGY05_17230)	upp	3723672..3724322 (-)	651	WP_065399113.1	uracil phosphoribosyltransferase	-
EGY05_RS17000 (EGY05_17235)	der	3724479..3725789 (-)	1311	WP_065399114.1	ribosome biogenesis GTPase Der	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25360.26 Da
• Isoelectric Point: 6.8205

>NTDB_id=325969 EGY05_RS16985 WP_123843295.1 3722219..3722872(+) (comF) [Chryseobacterium arthrosphaerae strain FDAARGOS_519]
MILDLLFPNRCIECNRIIDPDLLVCDLCFSQIYFTHYAYSEHNPIKERCSLFFPVEHTFALMQFEEESLSRKIIHELKYR
NREITGKVLADWTTERLDFKNEKPDLMVSIPLHPKKLRERGYNQLHVFTEALSAFYTIPFDHELLRRNHYAKAQALKDKK
HRLETVNTFSVTQPVTGKHILLIDDVFTTGNTISSVAWEILNSGDNKVSVLVMAMDV

Nucleotide

• Length: 654 bp

>NTDB_id=325969 EGY05_RS16985 WP_123843295.1 3722219..3722872(+) (comF) [Chryseobacterium arthrosphaerae strain FDAARGOS_519]
ATGATACTAGACCTTCTTTTCCCCAACCGCTGCATTGAATGCAACAGAATCATCGATCCTGATCTCCTGGTATGTGATCT
CTGTTTCAGTCAGATCTATTTCACCCATTATGCCTATTCCGAGCATAATCCGATTAAAGAAAGGTGCAGTCTGTTTTTTC
CTGTTGAACATACTTTTGCATTAATGCAGTTTGAAGAAGAAAGCCTGAGCCGGAAGATTATTCACGAGCTGAAATACAGG
AACAGAGAAATAACCGGAAAAGTCCTGGCAGACTGGACTACTGAACGGCTTGATTTTAAAAATGAAAAGCCGGATCTTAT
GGTAAGTATTCCACTTCATCCTAAGAAGCTAAGGGAAAGAGGATATAATCAGCTTCATGTATTTACCGAGGCATTGTCGG
CATTTTATACCATTCCTTTTGATCATGAGCTGCTCAGAAGAAATCATTATGCCAAAGCACAGGCCTTAAAAGATAAGAAA
CACAGACTGGAAACGGTCAACACATTTTCCGTGACACAACCTGTCACCGGAAAACATATTCTGCTGATTGACGATGTTTT
TACCACAGGAAATACAATATCCTCTGTTGCATGGGAGATCCTGAATTCCGGAGATAATAAAGTGAGCGTTCTTGTGATGG
CCATGGATGTGTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.389	99.539	0.512