Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EGX70_RS03125 Genome accession   NZ_CP033808
Coordinates   636338..637195 (-) Length   285 a.a.
NCBI ID   WP_123947905.1    Uniprot ID   -
Organism   Streptococcus sp. FDAARGOS_522     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 631338..642195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX70_RS03110 (EGX70_03110) pheT 631943..634348 (-) 2406 WP_123947903.1 phenylalanine--tRNA ligase subunit beta -
  EGX70_RS03115 (EGX70_03115) - 634402..634923 (-) 522 WP_000078400.1 GNAT family N-acetyltransferase -
  EGX70_RS03120 (EGX70_03120) pheS 635006..636046 (-) 1041 WP_000365655.1 phenylalanine--tRNA ligase subunit alpha -
  EGX70_RS03125 (EGX70_03125) endA 636338..637195 (-) 858 WP_123947905.1 DNA/RNA non-specific endonuclease Machinery gene
  EGX70_RS03130 (EGX70_03130) - 637270..637461 (-) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  EGX70_RS03135 (EGX70_03135) murA 637463..638734 (-) 1272 WP_000357877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EGX70_RS03140 (EGX70_03140) - 638797..639027 (-) 231 WP_000602601.1 DUF1146 family protein -
  EGX70_RS03145 (EGX70_03145) - 639092..639505 (-) 414 WP_000068054.1 F0F1 ATP synthase subunit epsilon -
  EGX70_RS03150 (EGX70_03150) atpD 639518..640924 (-) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  EGX70_RS03155 (EGX70_03155) - 640998..641879 (-) 882 WP_000919085.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31351.40 Da        Isoelectric Point: 10.4835

>NTDB_id=325812 EGX70_RS03125 WP_123947905.1 636338..637195(-) (endA) [Streptococcus sp. FDAARGOS_522]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQIKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=325812 EGX70_RS03125 WP_123947905.1 636338..637195(-) (endA) [Streptococcus sp. FDAARGOS_522]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAATTAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCCGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.948

81.404

0.537
  endA Streptococcus pneumoniae D39

65.948

81.404

0.537
  endA Streptococcus pneumoniae R6

65.948

81.404

0.537
  endA Streptococcus pneumoniae TIGR4

65.948

81.404

0.537

Multiple sequence alignment