Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | EGX95_RS17540 | Genome accession | NZ_CP033795 |
| Coordinates | 2922271..2923050 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. FDAARGOS_527 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2895650..2941685 | 2922271..2923050 | within | 0 |
Gene organization within MGE regions
Location: 2895650..2941685
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX95_RS17420 (EGX95_17415) | - | 2895844..2896095 (-) | 252 | WP_001239754.1 | YlmC/YmxH family sporulation protein | - |
| EGX95_RS17425 (EGX95_17420) | - | 2896222..2897463 (-) | 1242 | WP_000592994.1 | M16 family metallopeptidase | - |
| EGX95_RS17430 (EGX95_17425) | - | 2897550..2898449 (-) | 900 | WP_000647527.1 | polysaccharide deacetylase family protein | - |
| EGX95_RS17435 (EGX95_17430) | pnp | 2898601..2900739 (-) | 2139 | WP_000076746.1 | polyribonucleotide nucleotidyltransferase | - |
| EGX95_RS17440 (EGX95_17435) | rpsO | 2900900..2901169 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| EGX95_RS17445 (EGX95_17440) | ribF | 2901270..2902241 (-) | 972 | WP_000766710.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| EGX95_RS17450 (EGX95_17445) | truB | 2902285..2903208 (-) | 924 | WP_000399344.1 | tRNA pseudouridine(55) synthase TruB | - |
| EGX95_RS17455 (EGX95_17450) | rbfA | 2903295..2903651 (-) | 357 | WP_063246741.1 | 30S ribosome-binding factor RbfA | - |
| EGX95_RS17460 (EGX95_17455) | - | 2903667..2903948 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| EGX95_RS17465 (EGX95_17460) | infB | 2903945..2906005 (-) | 2061 | WP_000036342.1 | translation initiation factor IF-2 | - |
| EGX95_RS17470 (EGX95_17465) | - | 2906010..2906321 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| EGX95_RS17475 (EGX95_17470) | rnpM | 2906322..2906594 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| EGX95_RS17480 (EGX95_17475) | nusA | 2906606..2907712 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| EGX95_RS17485 (EGX95_17480) | rimP | 2907730..2908200 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| EGX95_RS17490 (EGX95_17485) | - | 2908533..2912834 (-) | 4302 | WP_000059980.1 | PolC-type DNA polymerase III | - |
| EGX95_RS17495 (EGX95_17490) | - | 2912959..2914659 (-) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| EGX95_RS17500 (EGX95_17495) | rseP | 2914769..2916025 (-) | 1257 | WP_001090248.1 | RIP metalloprotease RseP | - |
| EGX95_RS17505 (EGX95_17500) | dxr | 2916042..2917184 (-) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| EGX95_RS17510 (EGX95_17505) | cdsA | 2917208..2917999 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| EGX95_RS17515 (EGX95_17510) | uppS | 2918017..2918793 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| EGX95_RS17520 (EGX95_17515) | frr | 2918879..2919436 (-) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| EGX95_RS17525 (EGX95_17520) | pyrH | 2919439..2920161 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| EGX95_RS17530 (EGX95_17525) | tsf | 2920228..2921115 (-) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| EGX95_RS17535 (EGX95_17530) | rpsB | 2921219..2921920 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| EGX95_RS17540 (EGX95_17535) | codY | 2922271..2923050 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| EGX95_RS17545 (EGX95_17540) | hslU | 2923128..2924519 (-) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| EGX95_RS17550 (EGX95_17545) | hslV | 2924542..2925084 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| EGX95_RS17555 (EGX95_17550) | xerC | 2925127..2926026 (-) | 900 | WP_123805690.1 | tyrosine recombinase XerC | - |
| EGX95_RS17560 (EGX95_17555) | trmFO | 2926092..2927396 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EGX95_RS17565 (EGX95_17560) | topA | 2927447..2929525 (-) | 2079 | WP_001286973.1 | type I DNA topoisomerase | - |
| EGX95_RS17570 (EGX95_17565) | dprA | 2929670..2930539 (-) | 870 | WP_000818031.1 | DNA-processing protein DprA | - |
| EGX95_RS17575 (EGX95_17570) | sucD | 2930627..2931529 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| EGX95_RS17580 (EGX95_17575) | sucC | 2931549..2932709 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EGX95_RS17585 (EGX95_17580) | rnhB | 2932903..2933676 (-) | 774 | WP_001174725.1 | ribonuclease HII | - |
| EGX95_RS17590 (EGX95_17585) | ylqF | 2933728..2934618 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| EGX95_RS17595 (EGX95_17590) | lepB | 2934639..2935190 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| EGX95_RS17600 (EGX95_17595) | rplS | 2935292..2935636 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| EGX95_RS17605 (EGX95_17600) | trmD | 2935783..2936517 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EGX95_RS17610 (EGX95_17605) | rimM | 2936517..2937032 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| EGX95_RS17615 (EGX95_17610) | - | 2937156..2937383 (-) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| EGX95_RS17620 (EGX95_17615) | rpsP | 2937398..2937670 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| EGX95_RS17625 (EGX95_17620) | ffh | 2937771..2939120 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| EGX95_RS17630 (EGX95_17625) | - | 2939133..2939465 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| EGX95_RS17635 (EGX95_17630) | ftsY | 2939599..2940588 (-) | 990 | WP_000007646.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=325754 EGX95_RS17540 WP_000421288.1 2922271..2923050(-) (codY) [Bacillus sp. FDAARGOS_527]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=325754 EGX95_RS17540 WP_000421288.1 2922271..2923050(-) (codY) [Bacillus sp. FDAARGOS_527]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |