Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | EGX64_RS11025 | Genome accession | NZ_CP033782 |
| Coordinates | 2208344..2209411 (-) | Length | 355 a.a. |
| NCBI ID | WP_002446533.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain FDAARGOS_529 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2203344..2214411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX64_RS10985 (EGX64_10980) | gcvPA | 2203535..2204881 (-) | 1347 | WP_002446526.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| EGX64_RS10990 (EGX64_10985) | gcvT | 2204901..2205992 (-) | 1092 | WP_002446527.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EGX64_RS10995 (EGX64_10990) | - | 2206210..2206722 (-) | 513 | WP_002446528.1 | shikimate kinase | - |
| EGX64_RS11005 (EGX64_11000) | comGF | 2206887..2207378 (-) | 492 | WP_002446529.1 | competence type IV pilus minor pilin ComGF | - |
| EGX64_RS11010 (EGX64_11005) | - | 2207302..2207595 (-) | 294 | WP_002446530.1 | hypothetical protein | - |
| EGX64_RS11015 (EGX64_11010) | comGD | 2207582..2208019 (-) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| EGX64_RS11020 (EGX64_11015) | comGC | 2208009..2208326 (-) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EGX64_RS11025 (EGX64_11020) | comGB | 2208344..2209411 (-) | 1068 | WP_002446533.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EGX64_RS11030 (EGX64_11025) | comGA | 2209383..2210357 (-) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EGX64_RS11035 (EGX64_11030) | - | 2210414..2211037 (-) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| EGX64_RS11040 (EGX64_11035) | - | 2211037..2211363 (-) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| EGX64_RS11045 (EGX64_11040) | - | 2211363..2212349 (-) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| EGX64_RS11050 (EGX64_11045) | - | 2212349..2212549 (-) | 201 | WP_002446537.1 | YqgQ family protein | - |
| EGX64_RS11055 (EGX64_11050) | - | 2212533..2213993 (-) | 1461 | WP_002446538.1 | rhomboid family intramembrane serine protease | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42350.56 Da Isoelectric Point: 10.0598
>NTDB_id=325685 EGX64_RS11025 WP_002446533.1 2208344..2209411(-) (comGB) [Staphylococcus epidermidis strain FDAARGOS_529]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=325685 EGX64_RS11025 WP_002446533.1 2208344..2209411(-) (comGB) [Staphylococcus epidermidis strain FDAARGOS_529]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
48.596 |
100 |
0.487 |
| comGB | Staphylococcus aureus N315 |
48.596 |
100 |
0.487 |