Detailed information NTG0325454

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EGX91_RS09935
• Genome accession: NZ_CP033760
• Coordinates: 2228855..2229508 (-)
• Length: 217 a.a.
• NCBI ID: WP_027374733.1
• Uniprot ID: -
• Organism: Chryseobacterium indologenes strain FDAARGOS_537
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2223855..2234508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGX91_RS09920 (EGX91_09985)	der	2225909..2227219 (+)	1311	WP_027374736.1	ribosome biogenesis GTPase Der	-
EGX91_RS09925 (EGX91_09990)	upp	2227374..2228024 (+)	651	WP_098971885.1	uracil phosphoribosyltransferase	-
EGX91_RS09930 (EGX91_09995)	-	2228026..2228712 (-)	687	WP_098971884.1	alpha/beta fold hydrolase	-
EGX91_RS09935 (EGX91_10000)	comF	2228855..2229508 (-)	654	WP_027374733.1	ComF family protein	Machinery gene
EGX91_RS09940 (EGX91_10005)	-	2229596..2231074 (-)	1479	WP_061085150.1	helix-turn-helix domain-containing protein	-
EGX91_RS09945 (EGX91_10010)	aceB	2231201..2232775 (+)	1575	WP_123840861.1	malate synthase A	-
EGX91_RS09950 (EGX91_10015)	aceA	2232895..2234175 (+)	1281	WP_061085148.1	isocitrate lyase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25454.48 Da
• Isoelectric Point: 8.0805

>NTDB_id=325454 EGX91_RS09935 WP_027374733.1 2228855..2229508(-) (comF) [Chryseobacterium indologenes strain FDAARGOS_537]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV

Nucleotide

• Length: 654 bp

>NTDB_id=325454 EGX91_RS09935 WP_027374733.1 2228855..2229508(-) (comF) [Chryseobacterium indologenes strain FDAARGOS_537]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACCGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAATAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.389	99.539	0.512