Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FKM99_RS09445 Genome accession   NZ_CP041202
Coordinates   164090..164815 (-) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 159090..169815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS09420 (FKM99_09420) - 160210..160701 (+) 492 WP_005458943.1 type II secretion system protein M -
  FKM99_RS09425 (FKM99_09425) - 160703..161464 (+) 762 WP_062854600.1 type II secretion system protein N -
  FKM99_RS09430 (FKM99_09430) cysQ 161750..162577 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FKM99_RS09435 (FKM99_09435) nudE 162618..163187 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FKM99_RS09440 (FKM99_09440) nfuA 163408..163992 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FKM99_RS09445 (FKM99_09445) comF 164090..164815 (-) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  FKM99_RS09450 (FKM99_09450) bioH 164900..165667 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  FKM99_RS09455 (FKM99_09455) - 165791..166255 (+) 465 WP_005459035.1 hypothetical protein -
  FKM99_RS09460 (FKM99_09460) - 166391..168712 (-) 2322 WP_141179767.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=325019 FKM99_RS09445 WP_017449060.1 164090..164815(-) (comF) [Vibrio parahaemolyticus strain Vb0624]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=325019 FKM99_RS09445 WP_017449060.1 164090..164815(-) (comF) [Vibrio parahaemolyticus strain Vb0624]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAGTTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTATTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485