Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DHAF_RS11700 Genome accession   NC_011830
Coordinates   2547877..2549637 (-) Length   586 a.a.
NCBI ID   WP_005814583.1    Uniprot ID   Q24Y42
Organism   Desulfitobacterium hafniense DCB-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542877..2554637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DHAF_RS11670 (Dhaf_2353) - 2542965..2543360 (+) 396 WP_005814577.1 response regulator -
  DHAF_RS11675 (Dhaf_2354) - 2543645..2543884 (-) 240 WP_005814578.1 DUF2922 domain-containing protein -
  DHAF_RS11680 (Dhaf_2355) - 2543938..2544162 (-) 225 WP_005814579.1 DUF1659 domain-containing protein -
  DHAF_RS11685 (Dhaf_2356) - 2544354..2545199 (+) 846 WP_041272085.1 DUF3102 domain-containing protein -
  DHAF_RS11690 (Dhaf_2357) - 2545302..2545991 (-) 690 WP_005814581.1 GTP pyrophosphokinase -
  DHAF_RS11695 (Dhaf_2358) rcrQ 2546021..2547880 (-) 1860 WP_005814582.1 ABC transporter ATP-binding protein Regulator
  DHAF_RS11700 (Dhaf_2359) rcrP 2547877..2549637 (-) 1761 WP_005814583.1 ABC transporter ATP-binding protein Regulator
  DHAF_RS11705 (Dhaf_2360) - 2549777..2550259 (-) 483 WP_005814584.1 winged helix-turn-helix domain-containing protein -
  DHAF_RS11710 (Dhaf_2361) - 2550534..2550959 (-) 426 WP_011459595.1 AfsR/SARP family transcriptional regulator -
  DHAF_RS26765 - 2550851..2551090 (-) 240 Protein_2348 hypothetical protein -
  DHAF_RS11720 (Dhaf_2362) - 2551493..2551786 (+) 294 WP_080518272.1 AIM24 family protein -
  DHAF_RS11725 (Dhaf_2363) - 2551800..2552315 (-) 516 WP_005814588.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64454.14 Da        Isoelectric Point: 4.9862

>NTDB_id=32494 DHAF_RS11700 WP_005814583.1 2547877..2549637(-) (rcrP) [Desulfitobacterium hafniense DCB-2]
MVRIFKYLKAEEWLMAGISLIFIVAQVWLDLKLPDYMAEITTLTQTPNSAISDIWLNGGYMLLCALGSLAAAVVVGFFAA
KIAASFSQRLRSLLFNKVESFSMEEINRFSTSSLITRSTNDITQIQMLVVMGLQLVIKAPITAVWAITKISGKGFEWTMV
TGVAVLIMIIMVTFLLIVALPKFKKMQTLTDNITRVTRENLTGLRVVRAYNAENYQEEKFETANEELTSTQMFTNRAMAV
MMPVMSMLMSGLSLAIYWIGAYLIDAAGALDKLGLFSNMVVFSSYAMQVIMSFMMLVMIFIMLPRASVSAKRINEVLDTE
PRILDGTKTEGQPGLRGEVVFKSVSFQYPDAAEPVLEDISFTASPGETVAFIGSTGSGKSTLVNLALRFFDATQGEILID
GVNVQEYKLEALFNKIGYVPQKAVLFKGTVESNVAYGDNGGEGYPLDEVKKAVQIAQGADFVEKMDGQYQAAIAQGGANV
SGGQKQRLAIARAVCRKPEIYIFDDSFSALDYKTDRVLRSVLKQETAGVTSLIVAQRIGTIMDADQIIVLDEGKIVGKGT
HKDLLRDCTVYREIAMSQLSEEELAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=32494 DHAF_RS11700 WP_005814583.1 2547877..2549637(-) (rcrP) [Desulfitobacterium hafniense DCB-2]
ATGGTAAGAATCTTCAAGTATCTCAAGGCGGAGGAATGGCTGATGGCAGGCATCAGCCTGATCTTCATCGTCGCCCAGGT
TTGGCTTGATCTTAAACTCCCCGATTATATGGCGGAAATAACAACGCTGACCCAGACGCCCAACAGCGCCATCAGTGACA
TCTGGCTCAACGGCGGTTATATGCTGTTGTGTGCCTTGGGAAGTCTGGCTGCTGCAGTTGTCGTCGGTTTTTTTGCGGCC
AAAATAGCCGCCTCCTTTTCCCAGCGGCTGCGCAGTTTATTATTCAATAAGGTTGAATCCTTTTCCATGGAAGAAATCAA
CCGTTTTTCAACCTCAAGTCTGATTACTCGTTCCACAAACGACATCACCCAAATTCAAATGCTGGTGGTCATGGGCCTGC
AATTGGTGATTAAAGCTCCCATTACAGCGGTATGGGCCATCACCAAAATCTCGGGCAAAGGCTTCGAATGGACCATGGTC
ACAGGGGTTGCCGTTTTGATTATGATCATAATGGTTACCTTTCTGCTCATCGTTGCCCTGCCCAAATTCAAAAAGATGCA
GACCCTTACCGATAACATCACCCGGGTAACAAGAGAAAATCTCACCGGCCTGCGTGTTGTCCGCGCCTACAATGCTGAGA
ATTATCAGGAAGAGAAATTTGAAACGGCCAACGAAGAGCTTACCAGCACCCAGATGTTCACCAACCGCGCCATGGCAGTC
ATGATGCCGGTGATGAGTATGCTGATGAGCGGGCTGTCCCTGGCGATTTACTGGATAGGCGCCTATTTGATTGATGCGGC
AGGGGCGCTGGATAAATTAGGCCTGTTTTCCAACATGGTCGTCTTTTCCAGCTATGCCATGCAGGTCATCATGTCCTTTA
TGATGCTGGTCATGATCTTCATTATGCTGCCCCGCGCCAGCGTTTCGGCCAAACGCATCAATGAAGTGCTGGATACGGAA
CCCCGGATTTTAGACGGAACAAAAACCGAGGGCCAGCCGGGCCTGCGAGGTGAAGTCGTGTTTAAGTCTGTCAGCTTCCA
ATATCCCGATGCAGCGGAACCTGTCCTTGAAGATATCAGTTTTACGGCCTCCCCCGGTGAAACCGTTGCTTTTATCGGCT
CGACCGGAAGCGGCAAATCAACTCTTGTCAACCTTGCCCTCCGCTTCTTTGATGCAACCCAGGGGGAAATATTGATTGAC
GGCGTCAATGTGCAAGAATATAAGCTGGAAGCCCTTTTCAATAAAATCGGCTATGTACCCCAAAAGGCTGTGCTGTTCAA
AGGCACGGTAGAATCCAATGTGGCTTACGGCGATAACGGCGGCGAAGGCTATCCTCTGGATGAAGTGAAGAAGGCCGTAC
AAATTGCCCAGGGCGCAGACTTTGTGGAGAAAATGGACGGTCAATACCAAGCCGCTATTGCCCAGGGCGGAGCCAATGTA
TCGGGCGGTCAAAAGCAGCGGCTGGCCATCGCCCGGGCGGTGTGCCGCAAGCCGGAAATCTATATTTTTGACGATTCTTT
CTCAGCCCTTGATTACAAGACCGACCGGGTTCTGCGCAGTGTGCTTAAACAAGAAACCGCAGGTGTCACCAGCCTGATCG
TAGCCCAGCGCATCGGCACCATCATGGACGCCGACCAGATTATTGTGCTTGATGAAGGCAAAATCGTCGGCAAAGGAACC
CACAAAGACTTACTCCGGGACTGCACTGTCTATAGAGAAATTGCCATGTCGCAATTGAGCGAGGAGGAATTGGCATCATG
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q24Y42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.853

100

0.57

Multiple sequence alignment