Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EEB07_RS18335 Genome accession   NZ_CP033576
Coordinates   3587735..3588514 (+) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain NY12-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3582735..3593514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS18315 (EEB07_18315) trmFO 3583422..3584729 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EEB07_RS18320 (EEB07_18320) xerC 3584799..3585716 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  EEB07_RS18325 (EEB07_18325) hslV 3585732..3586277 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  EEB07_RS18330 (EEB07_18330) hslU 3586294..3587697 (+) 1404 WP_123117818.1 HslU--HslV peptidase ATPase subunit -
  EEB07_RS18335 (EEB07_18335) codY 3587735..3588514 (+) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EEB07_RS18340 (EEB07_18340) flgB 3588868..3589257 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  EEB07_RS18345 (EEB07_18345) flgC 3589257..3589709 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  EEB07_RS18350 (EEB07_18350) fliE 3589720..3590040 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  EEB07_RS18355 (EEB07_18355) fliF 3590083..3591693 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  EEB07_RS18360 (EEB07_18360) fliG 3591706..3592722 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  EEB07_RS18365 (EEB07_18365) fliH 3592715..3593470 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=324089 EEB07_RS18335 WP_017417775.1 3587735..3588514(+) (codY) [Bacillus velezensis strain NY12-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=324089 EEB07_RS18335 WP_017417775.1 3587735..3588514(+) (codY) [Bacillus velezensis strain NY12-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment