Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EEA47_RS10110 Genome accession   NZ_CP033457
Coordinates   2131306..2132031 (-) Length   241 a.a.
NCBI ID   WP_268206447.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain SNU_SP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126306..2137031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEA47_RS10085 (EEA47_10470) - 2127449..2127940 (+) 492 WP_268207673.1 type II secretion system protein M -
  EEA47_RS10090 (EEA47_10475) - 2127942..2128703 (+) 762 WP_213907968.1 type II secretion system protein N -
  EEA47_RS10095 (EEA47_10480) cysQ 2129006..2129833 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EEA47_RS10100 (EEA47_10485) nudE 2129878..2130447 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  EEA47_RS10105 (EEA47_10490) nfuA 2130624..2131208 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  EEA47_RS10110 (EEA47_10495) comF 2131306..2132031 (-) 726 WP_268206447.1 ComF family protein Machinery gene
  EEA47_RS10115 (EEA47_10500) bioH 2132116..2132883 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  EEA47_RS10120 (EEA47_10505) - 2133008..2133472 (+) 465 WP_005379316.1 hypothetical protein -
  EEA47_RS10125 (EEA47_10510) - 2133577..2135898 (-) 2322 WP_213907970.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27783.07 Da        Isoelectric Point: 9.7558

>NTDB_id=323815 EEA47_RS10110 WP_268206447.1 2131306..2132031(-) (comF) [Vibrio alginolyticus strain SNU_SP1]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSMCGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKASREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=323815 EEA47_RS10110 WP_268206447.1 2131306..2132031(-) (comF) [Vibrio alginolyticus strain SNU_SP1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATGTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment