Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SMUNN2025_RS01420 Genome accession   NC_013928
Coordinates   290116..292479 (-) Length   787 a.a.
NCBI ID   WP_002278054.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285116..297479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS01400 (SmuNN2025_0263) - 285886..286812 (-) 927 WP_002265465.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  SMUNN2025_RS01405 (SmuNN2025_0264) - 286827..287645 (-) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  SMUNN2025_RS01410 (SmuNN2025_0265) - 287680..288672 (-) 993 WP_002265466.1 PTS sugar transporter subunit IIB -
  SMUNN2025_RS01415 (SmuNN2025_0266) - 289547..290017 (-) 471 WP_002263356.1 hypothetical protein -
  SMUNN2025_RS01420 (SmuNN2025_0267) recD/recD2/recDB 290116..292479 (-) 2364 WP_002278054.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SMUNN2025_RS01425 (SmuNN2025_0268) lepB 292565..293152 (-) 588 WP_002263358.1 signal peptidase I -
  SMUNN2025_RS01430 (SmuNN2025_0269) rnhC 293172..294083 (-) 912 WP_002265469.1 ribonuclease HIII -
  SMUNN2025_RS01435 (SmuNN2025_0270) - 294279..294584 (+) 306 WP_002263360.1 hypothetical protein -
  SMUNN2025_RS01440 (SmuNN2025_0271) - 294581..295126 (+) 546 WP_002263361.1 CvpA family protein -
  SMUNN2025_RS01445 (SmuNN2025_0272) - 295529..296275 (+) 747 WP_002264188.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88841.34 Da        Isoelectric Point: 5.5775

>NTDB_id=32380 SMUNN2025_RS01420 WP_002278054.1 290116..292479(-) (recD/recD2/recDB) [Streptococcus mutans NN2025]
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGQQLKVERYQRAK
PSSAGLIKYFSSQHFKGIGKKTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAEQILAKLAEYG
LNNKTAVQIFERYKEESLTVITENPYQLVEDIQGIGFKMADKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAK
ELLEKSLFILEEVRQVELDPSQIAQELTQLISEDKVQNIGTKIFDNTLFYAESGIHKHLTRILDRPLEKEISSQDIQTEI
KHIQAEFNINYDKAQKNAIQKAIQSKVFLLTGGPGTGKTTVINGIIKVYANLHQIDLQKSDLPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDVFLDCDLIIIDEFSMVDTWLANQLFSAIASNTQIVIVGDSDQLPSVGPGQVLADLL
KINRLPQVSLTKIFRQSEDSTIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSGIDAQEIQILA
PMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGDKVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILD
FDGTEINYPRNEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSKSKLVMLGEIAAFDNAIKNEG
TKRKTYLIERFKKDECSGHHNTEKNKQGVKESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=32380 SMUNN2025_RS01420 WP_002278054.1 290116..292479(-) (recD/recD2/recDB) [Streptococcus mutans NN2025]
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATACCAGCAATTTTTTTAAAATTATTCTTCTGGA
AATTGACGATACTGACAGCGATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATGTTATTGAAGGAGAAA
ACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATATGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAA
CCCTCTTCTGCTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAAAAAACAGCCGAAAAAATTAT
TCACTTATATGGTGATGACCCTATTGATAATATTCTGGAAGATCCTGATAAGTTAGAAAGCATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAACAGATTCTGGCAAAATTAGCAGAATATGGA
TTAAATAACAAAACAGCTGTTCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTGTTATTACTGAAAATCCTTATCA
ACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCTGACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTC
CTCAGCGTTTTCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGACAAAGGTGACACCTATATTGAAGCCAAA
GAATTACTCGAAAAATCTCTTTTTATTCTTGAAGAGGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAGATAAGGTACAAAATATTGGTACTAAAATCTTTGATAATACGCTTTTTTATGCCGAATCAG
GCATTCATAAGCATCTTACCCGCATTCTGGATAGACCACTTGAAAAAGAGATCAGTAGCCAAGACATTCAAACTGAAATT
AAACATATTCAAGCAGAATTTAATATTAACTATGACAAGGCACAAAAAAATGCCATCCAAAAAGCCATCCAAAGCAAGGT
TTTCCTTTTAACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAAGGTTTATGCTAATTTGCATC
AAATTGACCTGCAAAAAAGTGACCTACCTATTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGATAGTGAATATCAGGCACTTGATGTTTTTCT
GGATTGTGATCTCATTATTATTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGTGCTATTGCTT
CAAATACACAAATTGTTATTGTTGGTGATAGCGATCAGCTCCCATCCGTCGGTCCAGGTCAAGTTTTGGCTGATTTACTG
AAAATAAATAGATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCAACCATTGTTACACTTGCTAA
CCAGATTCGCCAAGGTCGTCTACCAACTGATTTCACAGCTAAAAAGGCCGACCGTTCTTATTTTGAAGCGCAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGTATAGATGCTCAGGAAATACAGATTTTAGCA
CCGATGTATCGTGGGCAAGCAGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAAATAACCAGTT
AGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGATAAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGT
TTAATGGTGACATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAACAAGATGAAATGATTCTGGAT
TTTGATGGAACTGAGATTAACTATCCTCGCAATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCGGCAGACTTTTGCAGCGCAATCTCATTTATA
CAGCTATCACACGCTCAAAAAGCAAACTTGTTATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAAAAATGAAGGA
ACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGGATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACA
AGGAGTAAAAGAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATATCTTAACGATTGACCCTATGA
TTGGCTTATCTCAAGCTGACATTGACTTATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-524)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.145

94.536

0.408

Multiple sequence alignment