Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   D5285_RS14975 Genome accession   NZ_CP033389
Coordinates   2954196..2956592 (-) Length   798 a.a.
NCBI ID   WP_020452399.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2949196..2961592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS14955 (D5285_14955) - 2952143..2953201 (-) 1059 WP_020452397.1 AI-2E family transporter -
  D5285_RS14960 (D5285_14960) - 2953289..2953420 (-) 132 WP_003183926.1 YrzQ family protein -
  D5285_RS14965 (D5285_14965) - 2953436..2953627 (-) 192 WP_016885531.1 hypothetical protein -
  D5285_RS14970 (D5285_14970) - 2953643..2954107 (-) 465 WP_020452398.1 PRC-barrel domain-containing protein -
  D5285_RS14975 (D5285_14975) recD2 2954196..2956592 (-) 2397 WP_020452399.1 ATP-dependent RecD-like DNA helicase Machinery gene
  D5285_RS14980 (D5285_14980) - 2956644..2957294 (-) 651 WP_020452400.1 lipopolysaccharide assembly protein LapB -
  D5285_RS14985 (D5285_14985) mnmA 2957389..2958507 (-) 1119 WP_020452401.1 tRNA 2-thiouridine(34) synthase MnmA -
  D5285_RS14990 (D5285_14990) - 2958613..2959752 (-) 1140 WP_020452402.1 cysteine desulfurase family protein -
  D5285_RS14995 (D5285_14995) cymR 2959773..2960189 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89804.49 Da        Isoelectric Point: 4.9812

>NTDB_id=323576 D5285_RS14975 WP_020452399.1 2954196..2956592(-) (recD2) [Bacillus paralicheniformis strain CBMAI 1303]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVKKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIVGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASTVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGRELKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=323576 D5285_RS14975 WP_020452399.1 2954196..2956592(-) (recD2) [Bacillus paralicheniformis strain CBMAI 1303]
ATGCAGCGCCATAACCCGGACCAAATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTTAAAAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCCTGAGCGAATTCGGTTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGACACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAATCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCTCTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTACTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGTCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGCTGCCGGCCGT
GACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGGCGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGTATTCAGGTT
ATCATGGTTGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTTTTGGCATCGACTGTCAT
TCCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCGGCCGGCATCAATGAGTTAAACGCGCTTTTGCAGGGCATACTGAATCCCCCGAAGCCGAAAGGCAGGGAACTGAAGT
ACGGCGATGTCGTGTACCGTACCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAACACAACGTGTTTAACGGTGAT
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCGTCTCTTTTGACGGGAA
TGAAATGACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTCTGTGCGGGGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATGGCGCTGCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.977

100

0.821

Multiple sequence alignment