Detailed information NTG0323560

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D5285_RS09345
• Genome accession: NZ_CP033389
• Coordinates: 1826218..1826997 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain CBMAI 1303
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1821218..1831997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5285_RS09325 (D5285_09325)	trmFO	1821915..1823219 (+)	1305	WP_020451382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
D5285_RS09330 (D5285_09330)	xerC	1823286..1824200 (+)	915	WP_020451383.1	tyrosine recombinase XerC	-
D5285_RS09335 (D5285_09335)	hslV	1824214..1824759 (+)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
D5285_RS09340 (D5285_09340)	hslU	1824776..1826179 (+)	1404	WP_020451385.1	HslU--HslV peptidase ATPase subunit	-
D5285_RS09345 (D5285_09345)	codY	1826218..1826997 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D5285_RS09350 (D5285_09350)	flgB	1827349..1827738 (+)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
D5285_RS09355 (D5285_09355)	flgC	1827738..1828190 (+)	453	WP_020451388.1	flagellar basal body rod protein FlgC	-
D5285_RS09360 (D5285_09360)	fliE	1828204..1828521 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
D5285_RS09365 (D5285_09365)	fliF	1828572..1830173 (+)	1602	Protein_1810	flagellar basal-body MS-ring/collar protein FliF	-
D5285_RS09370 (D5285_09370)	fliG	1830187..1831203 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
D5285_RS09375 (D5285_09375)	fliH	1831187..1831954 (+)	768	WP_020451392.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=323560 D5285_RS09345 WP_003181756.1 1826218..1826997(+) (codY) [Bacillus paralicheniformis strain CBMAI 1303]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=323560 D5285_RS09345 WP_003181756.1 1826218..1826997(+) (codY) [Bacillus paralicheniformis strain CBMAI 1303]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467