Detailed information NTG0323543

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: FHI56_RS03055
• Genome accession: NZ_CP040804
• Coordinates: 373375..375879 (-)
• Length: 834 a.a.
• NCBI ID: WP_149561146.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LAB813
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 368375..380879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FHI56_RS03025 (FHI56_03025)	-	369662..369892 (-)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-
FHI56_RS03030 (FHI56_03030)	tsaB	370152..370838 (+)	687	WP_045771676.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
FHI56_RS03035 (FHI56_03035)	rimI	370798..371253 (+)	456	WP_045771675.1	ribosomal protein S18-alanine N-acetyltransferase	-
FHI56_RS03040 (FHI56_03040)	tsaD	371253..372266 (+)	1014	WP_014632584.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
FHI56_RS03045 (FHI56_03045)	-	372318..373010 (+)	693	WP_013991201.1	AzlC family ABC transporter permease	-
FHI56_RS03050 (FHI56_03050)	-	372997..373323 (+)	327	WP_013991200.1	AzlD domain-containing protein	-
FHI56_RS03055 (FHI56_03055)	recD/recD2/recDB	373375..375879 (-)	2505	WP_149561146.1	ATP-dependent RecD-like DNA helicase	Machinery gene
FHI56_RS03060 (FHI56_03060)	lepB	375940..376581 (-)	642	WP_118057824.1	signal peptidase I	-
FHI56_RS03065 (FHI56_03065)	rnhC	376600..377490 (-)	891	WP_048790106.1	ribonuclease HIII	-
FHI56_RS03070 (FHI56_03070)	zapA	377806..378120 (+)	315	WP_004183554.1	cell division protein ZapA	-
FHI56_RS03075 (FHI56_03075)	-	378117..378659 (+)	543	WP_045771669.1	CvpA family protein	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93941.16 Da
• Isoelectric Point: 4.4585

>NTDB_id=323543 FHI56_RS03055 WP_149561146.1 373375..375879(-) (recD/recD2/recDB) [Streptococcus salivarius strain LAB813]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDVKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVRNEG
AKRNTYLIQRFEQTYTQAVDKSVEKTVKNEATGASNQTKTKNNDPSETLENKDFSENINPSPDLVNTYSQPVDKSVNKPV
QTEENYRLTEENWSTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=323543 FHI56_RS03055 WP_149561146.1 373375..375879(-) (recD/recD2/recDB) [Streptococcus salivarius strain LAB813]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAATGCTAGTAATTTTTTCCGTATTCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTTACAGGAACCATGGGAGATGTCATGGAAGGTG
AAGATTATACCTTCTGGGGTCAGCTAACCAATCATCCCAAATATGGTGAACAACTCCAAATGACACGCTACGAACGGTCA
AAACCTTCTGCCAGCGGTCTTATCAAGTATTTCTCTAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGTGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCAAGTTAGAACAGATTCCTAACCTTTCAA
AGGTAAACCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAGCAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAACCTTATCGAAGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATAGCTGACCAACTAGCCGAACGCTTAGGAATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAGCCAGTATGGAAGAAGGCGACACCTATATCGAAGCC
AAAGCCTTGCTTGAACGAACTATCATACTTTTGGAAAGTGCTCGTCAAATTGAACTTGACCCTGCCTTGGTCGCTAAGGA
ATTAACCAATCTCATCCAAGAGGATAAAGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGCAAGCCTT
GAAGAGGTGGAAGAGGAACTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGAGGTCCCGGAACAGGGAAAACCACCGTTATTAATGGAATTATTAAAACCTATGCCGACCTTCATG
GTCTAGATGTCAAAAAGTCTGACTTGCCTATTATTTTAGCGGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATCCATAGACATTTGGGACTCAATAGCGAGGACGATTTCAAGACCTTGGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTTTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCCGAGGATTCCACCATCGTTACTTTAGCTAG
TCAGATGCGCCAAGGCCAATTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATTGTCTCTGCCGCTATAAAGAGCGGGATCGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGATCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGATATTTTCTTCCGTAAGAACGACAAAATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATTCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCTATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGACAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCGCAGCCTTTGATTATGCCGTTCGCAACGAAGGA
GCTAAACGGAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGACTGT
TAAAAACGAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TCTCTGAAAATATCAATCCATCCCCAGATCTTGTTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGTCAACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• AAA domain (AAA_30) (331-523)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.2	89.928	0.406