Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FDP16_RS09475 Genome accession   NZ_CP040798
Coordinates   1918994..1921360 (+) Length   788 a.a.
NCBI ID   WP_176799468.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913994..1926360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS09455 (FDP16_09870) - 1916370..1916921 (-) 552 WP_002929159.1 CvpA family protein -
  FDP16_RS09460 (FDP16_09875) - 1916932..1917222 (-) 291 WP_002896593.1 hypothetical protein -
  FDP16_RS09465 (FDP16_09880) rnhC 1917411..1918301 (+) 891 WP_176799466.1 ribonuclease HIII -
  FDP16_RS09470 (FDP16_09885) lepB 1918305..1918934 (+) 630 WP_176799467.1 signal peptidase I -
  FDP16_RS09475 (FDP16_09890) recD/recD2/recDB 1918994..1921360 (+) 2367 WP_176799468.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FDP16_RS09480 (FDP16_09895) - 1921413..1922051 (-) 639 WP_176799469.1 TetR/AcrR family transcriptional regulator -
  FDP16_RS09485 (FDP16_09900) - 1922126..1922875 (-) 750 Protein_1863 CPBP family intramembrane glutamic endopeptidase -
  FDP16_RS09490 (FDP16_09905) - 1922865..1923659 (-) 795 WP_176799470.1 CPBP family intramembrane glutamic endopeptidase -
  FDP16_RS09495 (FDP16_09915) - 1923979..1924305 (-) 327 WP_002914412.1 hypothetical protein -
  FDP16_RS09500 (FDP16_09920) dinB 1924517..1925581 (-) 1065 WP_126435930.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88581.52 Da        Isoelectric Point: 4.5730

>NTDB_id=323340 FDP16_RS09475 WP_176799468.1 1918994..1921360(+) (recD/recD2/recDB) [Streptococcus sanguinis strain CGMH058]
MEFYFSGTIERIIFENPSNFFRILLLDIEDTDAEDFEDFEIIVTGSMADVMEGEDYTFWGSLVQHPKYGQQLKISRYERA
KPSSKGLVKYFSSDHFKGIGVKTAQKIVQLYGEDTENTIDKILAEPEKLTQINGLAAKNREAFVAKLRLNYGTEMVLAKL
AAYGIPNKLAFQIQDTYKEETLDIVEKYPYQLVEDIQGIGFKIADHLAKELGIQSDAPERFRAGLVHTLLTQSMERGDTY
VEARDLLEHTIELLESSRQVELDPSLVADELAHLIEEDKVQNVETKIFENSLFFAEEGIRSNLVRLLEKGEPDCFEADNI
TAAIQQVEENSGISYDSIQKEAIRQAINQKVFILTGGPGTGKTTVINCIIAVYAQLRGLDLQKAHDLPILLAAPTGRAAR
RMNELTGLPSATIHRHLGMTGDDDTSHLDDFLDADFIIVDEFSMVDTWLANQLLSNISSQTKLLIVGDADQLPSVSPGQV
LADLLQIPTIPQTKLETIYRQSEESTIVTLASQIQKGILPADFTDKKADRSYFEARNEHIPPMIEKIASAAIRSSIPAQD
VQVLAPMYRGPAGIDQINNLMQNLINPVEKDELTFEAPDCQYRQGDRVIHLVNDAESNVFNGDLGYISDLLPAKYTDSKQ
DELTIDFDGNELVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRAKSKLILLGEKAAFDY
AAKNTGTARKTYLIERFGDFLQAENNIHIPVDKMKTPVENYVLTKENFLKIDPLIGLTEEDIHSIFST

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=323340 FDP16_RS09475 WP_176799468.1 1918994..1921360(+) (recD/recD2/recDB) [Streptococcus sanguinis strain CGMH058]
ATGGAATTTTACTTTTCAGGAACGATTGAACGGATTATTTTTGAAAATCCCAGCAACTTTTTCCGCATCCTGCTCTTAGA
TATTGAGGATACAGATGCCGAGGATTTTGAAGATTTTGAAATCATTGTCACCGGATCTATGGCAGATGTCATGGAAGGCG
AAGATTACACTTTCTGGGGCAGTCTTGTCCAGCACCCCAAATATGGCCAGCAGCTGAAAATTTCCCGCTATGAGCGAGCC
AAACCCAGCAGTAAAGGCCTAGTAAAATACTTCTCCAGCGATCATTTCAAGGGCATCGGGGTCAAGACTGCTCAAAAAAT
CGTCCAACTCTACGGAGAAGATACCGAGAACACTATTGACAAGATTTTAGCAGAGCCGGAAAAGCTGACTCAGATAAACG
GCTTAGCAGCTAAGAACCGCGAGGCCTTTGTCGCCAAACTCAGACTCAACTACGGAACTGAGATGGTACTAGCCAAGCTG
GCAGCCTACGGCATTCCCAATAAGCTAGCTTTTCAAATCCAGGATACCTACAAGGAAGAAACGCTGGATATTGTCGAAAA
ATATCCCTATCAGCTGGTAGAGGATATTCAGGGGATCGGCTTTAAAATCGCTGACCATCTGGCAAAAGAGCTGGGGATCC
AAAGTGATGCCCCTGAGCGTTTTCGGGCTGGCCTTGTCCACACCTTGCTGACCCAGTCCATGGAGCGGGGAGACACCTAT
GTTGAAGCTCGTGATCTACTCGAGCATACCATCGAGCTCTTAGAAAGCTCACGCCAAGTGGAGCTGGACCCTAGTCTAGT
CGCTGATGAGCTGGCTCATCTGATTGAGGAAGATAAGGTCCAAAATGTAGAGACCAAGATTTTTGAAAACAGCCTCTTCT
TTGCTGAAGAAGGAATAAGGAGCAATCTGGTCCGTCTGCTGGAAAAAGGAGAGCCAGACTGCTTTGAAGCAGATAACATT
ACTGCGGCTATCCAGCAAGTGGAGGAGAACTCCGGTATCTCCTATGACAGCATCCAGAAAGAAGCCATCCGTCAGGCTAT
CAATCAAAAGGTCTTTATCCTAACCGGCGGACCGGGAACTGGAAAAACTACCGTTATCAACTGTATCATCGCAGTCTACG
CCCAGCTTCGCGGTTTGGATCTGCAGAAAGCCCATGATCTGCCTATTCTGCTAGCCGCTCCCACTGGACGTGCAGCTCGT
CGCATGAACGAATTGACTGGTCTTCCTAGCGCCACTATTCACCGCCATTTGGGAATGACTGGCGATGATGATACCAGCCA
TTTGGATGATTTTCTGGATGCTGATTTTATCATTGTGGATGAATTTTCCATGGTGGATACTTGGCTAGCTAATCAACTCC
TCAGCAATATCTCCTCTCAAACCAAGCTCTTGATTGTCGGAGATGCGGACCAGCTGCCCTCTGTCAGTCCAGGTCAGGTT
CTGGCAGACTTGCTGCAGATACCGACTATTCCACAGACCAAGCTGGAAACCATCTATCGGCAGAGTGAAGAGTCTACAAT
CGTCACACTGGCCAGCCAGATTCAGAAGGGCATTTTACCAGCAGACTTTACAGATAAAAAAGCGGATCGTTCTTATTTTG
AAGCTAGAAATGAGCATATCCCGCCTATGATTGAGAAAATCGCTAGCGCAGCCATTCGCAGCAGTATCCCAGCTCAAGAT
GTTCAGGTATTGGCACCTATGTATCGGGGGCCAGCCGGCATTGACCAGATTAACAATCTTATGCAAAATCTCATCAATCC
TGTCGAGAAAGATGAGCTGACCTTTGAAGCTCCTGATTGTCAGTATCGCCAAGGAGACAGGGTTATTCACTTGGTCAATG
ATGCCGAAAGCAATGTCTTCAACGGTGACTTAGGCTATATCAGCGACCTGCTGCCTGCTAAGTATACCGACTCCAAGCAG
GACGAGCTGACCATTGACTTTGATGGCAATGAACTTGTTTATCAGCGCAGTGAGTGGTACAAGATTCGCCTAGCCTACGC
CATGAGCATTCACAAGTCTCAGGGCAGTGAATTTCCGGTGGTCATCTTGCCCATCACCAAGAGCAGTCATCGGATGCTGC
AGCGTAACCTCATCTACACCGCTATCACCCGCGCCAAGAGCAAGTTGATCTTACTTGGGGAAAAAGCAGCCTTTGATTAT
GCTGCAAAAAACACTGGCACCGCCCGTAAAACCTATCTAATCGAGCGCTTTGGCGACTTTCTGCAAGCTGAGAACAATAT
TCACATTCCTGTGGATAAAATGAAAACACCTGTGGAAAACTATGTCCTGACTAAGGAAAATTTCCTGAAAATCGACCCCT
TAATTGGCCTAACCGAGGAAGATATCCACAGTATATTCAGCACATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(665-712)

AAA domain (AAA_30)

(336-526)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-647)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.667

95.178

0.387