Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FDP16_RS08925 Genome accession   NZ_CP040798
Coordinates   1786567..1787355 (-) Length   262 a.a.
NCBI ID   WP_002903941.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781567..1792355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS08905 (FDP16_09275) gatA 1781990..1783456 (-) 1467 WP_176799382.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  FDP16_RS08910 (FDP16_09280) gatC 1783456..1783758 (-) 303 WP_176799383.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FDP16_RS08915 (FDP16_09285) aspS 1783962..1785698 (-) 1737 WP_176799384.1 aspartate--tRNA ligase -
  FDP16_RS08920 (FDP16_09290) - 1786010..1786567 (-) 558 WP_176799385.1 cysteine hydrolase family protein -
  FDP16_RS08925 (FDP16_09295) codY 1786567..1787355 (-) 789 WP_002903941.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FDP16_RS08930 (FDP16_09300) - 1787557..1790142 (-) 2586 WP_256254223.1 SEC10/PgrA surface exclusion domain-containing protein -
  FDP16_RS08935 (FDP16_09305) - 1790464..1791678 (-) 1215 WP_176799387.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29704.01 Da        Isoelectric Point: 5.0921

>NTDB_id=323332 FDP16_RS08925 WP_002903941.1 1786567..1787355(-) (codY) [Streptococcus sanguinis strain CGMH058]
MANLLEKTRKITSILKRSEEQMQEELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNNDRVEAFFQDKNFPEEYV
HEANLVYETEANLPVAHDLTIFPVETKDEFPDGLTTIAPIHVSGIRLGSLIIWRNDKEFADDDLILIEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=323332 FDP16_RS08925 WP_002903941.1 1786567..1787355(-) (codY) [Streptococcus sanguinis strain CGMH058]
ATGGCCAATTTACTAGAAAAAACACGAAAAATCACGTCAATTTTGAAGCGCTCAGAGGAGCAGATGCAGGAAGAGCTACC
CTACAATGCTATTACGCGTCAGTTGGCTGATATTATCCACTGCAATGCCTGCATTATCAACAGCAAGGGCCGTCTTTTAG
GCTATTTCATGCGCTATAAGACCAATAATGACCGTGTGGAAGCTTTTTTCCAGGATAAGAATTTCCCAGAGGAATACGTT
CACGAAGCCAATCTGGTCTATGAAACAGAGGCTAATCTGCCAGTTGCACATGATTTGACGATTTTCCCAGTGGAGACTAA
GGATGAGTTTCCGGACGGGCTGACAACCATTGCCCCTATCCATGTTTCAGGGATTCGTCTAGGCTCACTGATTATCTGGC
GCAATGACAAGGAATTTGCGGACGATGATCTGATTTTGATTGAGATTGCCAGCACAGTGGTCGGTATCCAGCTGCTTAAC
TTCCAGCGGGAAGAGGATGAGAAAAATATTCGCCGCCGAACAGCTGTGACCATGGCAGTCAATACCCTGTCTTACTCAGA
ACTGAGAGCTGTTTCAGCTATTCTGGGCGAGCTCAATGGCAATGAAGGCCAGCTGACAGCGTCTGTCATCGCTGATCGTA
TTGGGATTACCCGCTCAGTGATTGTCAATGCCTTGCGTAAGCTGGAAAGTGCCGGGATTATTGAAAGCCGCTCGCTAGGG
ATGAAAGGAACTTATCTAAAAGTTCTGATTCCGGATGTCTTTGATGAAATTAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

51.22

93.893

0.481

Multiple sequence alignment