Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EB779_RS13625 Genome accession   NZ_CP033352
Coordinates   2333612..2334217 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain CFSA629     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328612..2339217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB779_RS13605 (EB779_12890) - 2329007..2330767 (-) 1761 WP_000156454.1 Lon protease family protein -
  EB779_RS13610 (EB779_12895) matP 2330953..2331405 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EB779_RS13615 (EB779_12900) ompA 2331477..2332529 (-) 1053 WP_001674965.1 porin OmpA -
  EB779_RS13620 (EB779_12905) sulA 2332886..2333395 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  EB779_RS13625 (EB779_12910) sxy/tfoX 2333612..2334217 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  EB779_RS13630 (EB779_12915) yccS 2334204..2336357 (-) 2154 WP_000950880.1 YccS family putative transporter -
  EB779_RS13635 (EB779_12920) - 2336376..2336822 (-) 447 WP_001261222.1 YccF domain-containing protein -
  EB779_RS13640 (EB779_12925) helD 2336946..2337539 (+) 594 Protein_2222 DNA helicase IV -
  EB779_RS13645 (EB779_12930) - 2337533..2337808 (-) 276 Protein_2223 DUF2057 family protein -
  EB779_RS13650 (EB779_12935) - 2337982..2338395 (+) 414 WP_001537782.1 CoA-binding protein -
  EB779_RS13655 (EB779_12940) hspQ 2338440..2338757 (-) 318 WP_000561983.1 heat shock protein HspQ -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=323317 EB779_RS13625 WP_001202375.1 2333612..2334217(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain CFSA629]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=323317 EB779_RS13625 WP_001202375.1 2333612..2334217(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain CFSA629]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment