Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SMI_RS08795 Genome accession   NC_013853
Coordinates   1786403..1788739 (-) Length   778 a.a.
NCBI ID   WP_001035051.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1781403..1793739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08775 (smi_1729) - 1781756..1783123 (-) 1368 WP_000111449.1 tetratricopeptide repeat protein -
  SMI_RS08780 (smi_1730) - 1783136..1784674 (-) 1539 WP_000030106.1 Hsp70 family protein -
  SMI_RS08785 (smi_1731) - 1784684..1785211 (-) 528 WP_000598973.1 hypothetical protein -
  SMI_RS08790 (smi_1732) - 1785424..1786353 (+) 930 WP_001150386.1 helix-turn-helix domain-containing protein -
  SMI_RS08795 (smi_1733) mutS/mutS2 1786403..1788739 (-) 2337 WP_001035051.1 endonuclease MutS2 Machinery gene
  SMI_RS08800 (smi_1734) - 1788842..1789390 (-) 549 WP_000624506.1 CvpA family protein -
  SMI_RS08805 (smi_1735) zapA 1789387..1789689 (-) 303 WP_000002023.1 cell division protein ZapA -
  SMI_RS08810 (smi_1736) rnhC 1789776..1790657 (+) 882 WP_000146887.1 ribonuclease HIII -
  SMI_RS08815 (smi_1737) lepB 1790661..1791275 (+) 615 WP_004245100.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87612.55 Da        Isoelectric Point: 6.9855

>NTDB_id=32323 SMI_RS08795 WP_001035051.1 1786403..1788739(-) (mutS/mutS2) [Streptococcus mitis B6]
MNKKILETLEFNKVKALFEPHLLTEQGLEQLRQLAPTAKADKIKQAFAEMKEMQDLFVEQPHFTILATKEIAGVCKRLEM
GADLNIEEFLLLKRVLLSSRELQSFYANLENVSLEELALWFEKLHDFPQLQGNLQAFNDAGFIENFASEELARIRRKIHD
SESQVRDVLQDLLKQKAQMLTEGIVASRNGRQVLPVKNTYRNKIAGVVHDISASGNTVYIEPREVVKLSEEIASLRADER
YEMLRILQEISERVRPHAAEIANDAWIIGHLDLIRAKVRFIQERQAVVPQLSENQEIQLLHVCHPLVKNAVANDIHFGQD
LTAIVITGPNTGGKTIMLKTLGLTQIMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVN
QHSLLLLDELGAGTDPQEGAALAMAILEDLRLRQVKTMATTHYPELKVYGIETAFVQNASMEFDTATLRPTYRFMQGVPG
RSNAFEIAKRLGLSEVIVGDASQQVNQDNDVNRIIEQLEEQTLESRKRLDNIREVEQENLKMNRALKKLYNELNREKETE
LNKAREQAAEIVDMALSESDQILKNLHSKSQLKPHEIIEAKAKLKKLAPEKVDLSKNKVLQKAKKKRAPKVGDDIVVLSY
GQRGTLTSQLKDGRWEAQVGLIKMSLEEKEFDLVQAQQEKQVKKKQVNVVKRTSGRGPQARLDLRGKRYEEAMNELDAFI
DQALLNNMAQVDIIHGIGTGVIREGVTKYLQRNKHVKSFGYAPQNAGGSGATIVTFKG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=32323 SMI_RS08795 WP_001035051.1 1786403..1788739(-) (mutS/mutS2) [Streptococcus mitis B6]
ATGAATAAGAAAATATTAGAAACATTAGAGTTCAATAAGGTCAAGGCCTTGTTTGAACCTCATTTGTTGACCGAGCAGGG
CTTGGAGCAATTGAGACAGCTGGCTCCGACTGCCAAAGCGGATAAAATCAAACAGGCCTTTGCTGAGATGAAGGAAATGC
AGGATCTCTTTGTCGAGCAACCGCATTTTACCATTCTTGCAACCAAGGAAATCGCAGGAGTCTGCAAGCGGTTGGAGATG
GGAGCGGACCTCAATATCGAGGAGTTCCTACTCTTGAAGCGCGTGCTTCTTTCTAGCAGAGAACTGCAAAGTTTTTATGC
CAATCTGGAAAATGTCAGCTTGGAAGAATTAGCCCTTTGGTTTGAGAAATTACATGATTTTCCTCAATTACAAGGAAATC
TACAAGCCTTCAATGATGCAGGTTTCATTGAAAATTTTGCCAGTGAAGAATTGGCTCGCATCCGTCGAAAAATCCATGAT
AGCGAGAGTCAGGTACGCGATGTCCTACAGGACCTGCTTAAGCAAAAAGCGCAGATGTTGACGGAAGGAATTGTTGCTAG
CAGAAATGGCCGTCAGGTTTTACCAGTTAAAAACACCTACCGCAATAAGATTGCAGGTGTCGTTCATGATATTTCTGCCA
GCGGAAACACCGTCTATATCGAACCCCGTGAGGTGGTCAAACTGAGCGAAGAAATTGCCAGTTTGCGAGCAGATGAGCGC
TATGAAATGCTTCGCATTCTCCAAGAAATTTCTGAACGTGTCCGCCCTCATGCGGCTGAGATTGCTAATGACGCTTGGAT
TATCGGTCATCTGGACTTGATTCGTGCCAAGGTACGCTTTATCCAAGAAAGGCAAGCAGTCGTTCCTCAGCTGTCAGAAA
ATCAGGAAATTCAACTGCTCCATGTATGTCATCCTCTGGTCAAAAATGCCGTCGCAAATGATATCCATTTTGGTCAAGAT
TTAACAGCGATTGTCATTACAGGACCCAATACAGGTGGGAAGACCATCATGCTTAAAACTCTGGGCTTGACGCAGATTAT
GGCCCAGTCTGGTTTGCCGATTTTAGCAGATAAGGGAAGTCGTGTTGGTATTTTTGAAGAAATCTTTGCTGATATTGGCG
ATGAGCAGTCTATTGAGCAGAGCTTGTCTACCTTCTCTAGTCACATGACTAATATCGTGGATATTCTTGGCAAGGTTAAC
CAACATTCACTCTTACTTTTGGATGAGTTGGGGGCTGGTACAGACCCTCAAGAGGGAGCTGCCCTTGCCATGGCTATTCT
GGAGGACCTTCGCCTGCGTCAAGTCAAGACCATGGCGACGACCCACTATCCCGAACTCAAGGTCTATGGTATCGAGACAG
CCTTTGTGCAAAACGCCAGCATGGAGTTTGATACTGCAACTCTACGCCCGACCTATCGCTTTATGCAGGGAGTTCCTGGC
CGAAGCAATGCCTTTGAAATTGCCAAACGTCTAGGCCTATCTGAAGTTATCGTAGGGGATGCCAGCCAGCAGGTCAATCA
GGACAATGATGTCAATCGTATTATTGAGCAGCTGGAAGAGCAGACGCTGGAAAGCCGTAAACGCTTGGACAATATCCGTG
AGGTGGAGCAAGAAAATCTCAAGATGAACCGTGCTCTCAAAAAACTCTACAACGAGCTCAATCGTGAAAAGGAAACCGAG
CTTAACAAGGCGCGTGAACAGGCTGCTGAGATTGTAGACATGGCCCTAAGTGAGAGTGACCAGATTCTCAAAAACCTCCA
CAGTAAGTCCCAGCTCAAACCTCATGAAATCATTGAAGCCAAGGCCAAGCTGAAAAAATTGGCTCCTGAAAAAGTGGACT
TGTCTAAAAACAAGGTTCTTCAAAAGGCTAAGAAAAAACGAGCTCCAAAGGTGGGAGATGATATCGTGGTTCTCAGTTAT
GGACAGCGTGGTACCTTGACTAGTCAACTCAAGGACGGCCGCTGGGAAGCCCAAGTTGGTTTGATCAAGATGTCCTTGGA
AGAAAAAGAATTTGACCTTGTTCAAGCCCAGCAAGAAAAGCAAGTCAAGAAGAAACAAGTCAATGTTGTGAAACGAACTT
CTGGTCGAGGACCTCAAGCCAGACTGGATCTTCGAGGTAAACGCTATGAAGAGGCTATGAATGAGCTAGATGCCTTTATC
GACCAAGCCTTGCTTAACAATATGGCCCAAGTCGACATCATCCATGGTATCGGAACTGGTGTTATCCGTGAAGGTGTCAC
CAAATACCTACAAAGAAATAAACATGTCAAGAGTTTCGGTTATGCCCCACAAAATGCTGGAGGCAGTGGTGCGACTATTG
TGACATTTAAAGGATAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

Smr domain (Smr)

(702-777)

MutS domain V (MutS_V)

(324-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.582

100

0.413

Multiple sequence alignment