Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FF962_RS28215 Genome accession   NZ_CP040684
Coordinates   5904314..5904739 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain C79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5899314..5909739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF962_RS28195 (FF962_28200) ileS 5899471..5902302 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  FF962_RS28200 (FF962_28205) lspA 5902295..5902804 (+) 510 WP_003094728.1 signal peptidase II -
  FF962_RS28205 (FF962_28210) fkpB 5902797..5903237 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FF962_RS28210 (FF962_28215) ispH 5903323..5904267 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FF962_RS28215 (FF962_28220) comF 5904314..5904739 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  FF962_RS28220 (FF962_28225) pilY2 5904736..5905083 (-) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  FF962_RS28225 (FF962_28230) pilY1 5905085..5908576 (-) 3492 WP_021264113.1 type 4a pilus biogenesis protein PilY1 -
  FF962_RS28230 (FF962_28235) pilX 5908588..5909175 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=323229 FF962_RS28215 WP_003094721.1 5904314..5904739(-) (comF) [Pseudomonas aeruginosa strain C79]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=323229 FF962_RS28215 WP_003094721.1 5904314..5904739(-) (comF) [Pseudomonas aeruginosa strain C79]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383