Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VS_RS22655 Genome accession   NC_011753
Coordinates   142535..143248 (-) Length   237 a.a.
NCBI ID   WP_012603014.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137535..148248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS00650 (VS_0144) - 138689..139171 (+) 483 WP_009848017.1 type II secretion system protein M -
  VS_RS00655 (VS_0145) - 139179..139958 (+) 780 WP_012603010.1 type II secretion system protein N -
  VS_RS00660 (VS_0146) cysQ 140080..140907 (-) 828 WP_012603011.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VS_RS00665 (VS_0147) nudE 140944..141495 (-) 552 WP_009848014.1 ADP compounds hydrolase NudE -
  VS_RS00670 (VS_0148) nfuA 141841..142425 (-) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  VS_RS22655 (VS_0149) comF 142535..143248 (-) 714 WP_012603014.1 ComF family protein Machinery gene
  VS_RS00680 (VS_0150) bioH 143342..144118 (+) 777 WP_012603015.1 pimeloyl-ACP methyl ester esterase BioH -
  VS_RS00685 (VS_0152) - 144473..144946 (+) 474 WP_012603017.1 hypothetical protein -
  VS_RS00690 (VS_0153) - 145214..147544 (-) 2331 WP_012603018.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27391.72 Da        Isoelectric Point: 9.1556

>NTDB_id=32308 VS_RS22655 WP_012603014.1 142535..143248(-) (comF) [Vibrio atlanticus]
MLSDWLQKHTPRLVTPQCDLCKLDKSHSDTHPRWCNYCLKLFDPVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPASMITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFHGNIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=32308 VS_RS22655 WP_012603014.1 142535..143248(-) (comF) [Vibrio atlanticus]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCGACCTGTGTAAGCTAGATAAGTCGCA
CAGCGATACTCACCCTAGATGGTGTAATTATTGTCTCAAACTCTTTGATCCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACGCTGCTCACAGTAGAGCAGTGCGGGCAATGTTTATCACAGCCTCCACCTTGGCATCGTCTCTATTGTGTTGGGGAC
TACACCTTTCCAACAGCACGTTACATTCAGCAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGCT
ATTAGCTTCACGTATCGAACATCCTGCTTCGATGATCACCAGTGTCCCTCTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTCGCTAATTACACAGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACAGCTTCTCAGCAAGGGCTAACTAAATCCGCGCGATTACACAATCTAAAGAGTGCTTTTACGCTTAGAAAACAAGA
CTTTCATGGAAATATCCCCTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGTGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.042

100

0.553
  comF Vibrio campbellii strain DS40M4

49.59

100

0.511

Multiple sequence alignment