Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SMI_RS03460 Genome accession   NC_013853
Coordinates   636841..637629 (+) Length   262 a.a.
NCBI ID   WP_001284993.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 631841..642629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS03445 (smi_0684) - 632763..633104 (+) 342 WP_000717797.1 P-II family nitrogen regulator -
  SMI_RS03450 (smi_0685) - 633462..635027 (+) 1566 WP_000671233.1 DEAD/DEAH box helicase -
  SMI_RS03455 (smi_0686) - 635468..636634 (-) 1167 WP_000163008.1 IS30-like element ISSmi1 family transposase -
  SMI_RS03460 (smi_0687) codY 636841..637629 (+) 789 WP_001284993.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SMI_RS03465 (smi_0688) - 637629..638204 (+) 576 WP_000158730.1 cysteine hydrolase family protein -
  SMI_RS03475 (smi_0690) - 638508..639785 (+) 1278 WP_001068276.1 ABC transporter permease -
  SMI_RS03480 (smi_0691) vex2 639798..640430 (+) 633 WP_000173749.1 ABC transporter ATP-binding subunit Vex2 -
  SMI_RS03485 (smi_0692) vex3 640716..642095 (+) 1380 WP_000902978.1 ABC transporter permease subunit Vex3 -
  SMI_RS03490 - 642235..642357 (-) 123 WP_164925512.1 chlorohydrolase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29638.94 Da        Isoelectric Point: 5.0797

>NTDB_id=32282 SMI_RS03460 WP_001284993.1 636841..637629(+) (codY) [Streptococcus mitis B6]
MANLLEKTRKITSILKRSEEQLQEELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYDTEANLTVDHDLSIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=32282 SMI_RS03460 WP_001284993.1 636841..637629(+) (codY) [Streptococcus mitis B6]
ATGGCAAATTTATTAGAAAAAACTAGAAAAATTACTTCTATCTTGAAGCGCTCGGAGGAGCAGTTACAGGAAGAACTTCC
CTACAATGCGATTACCCGTCAATTGGCGGATATTATTGACTGTAATGCTTGTATTGTTAACAGCAAGGGTCGTCTTCTTG
GCTATTTTATGCGTTATAAAACCAATACAGATCGTGTAGAGCAATTCTTCCAAACTAAGATTTTCCCGGATGACTATGTA
CAGGGAGCGAACATGATTTACGATACAGAAGCCAATCTGACAGTTGATCATGATTTGAGTATTTTTCCTGTAGAGAGTCG
TGCCGACTTTCCAGACGGTTTGACGACTATTGCACCGATTCATGTATCAGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GCAATGATAAAAAATTCGAAGACGAGGATTTGATTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAACTCCTTAAT
TTCCAACGTGAAGAAGATGAGAAAAATATTCGCCGCCGTACTGCTGTTACCATGGCGGTTAATACCCTTTCTTACTCCGA
ACTTCGTGCTGTTTCAGCCATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCCCTACGTAAACTTGAGTCTGCAGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.977

100

0.63
  codY Bacillus subtilis subsp. subtilis str. 168

48.78

93.893

0.458

Multiple sequence alignment