Detailed information NTG0322739

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: D9Y32_RS16255
• Genome accession: NZ_CP033218
• Coordinates: 3150059..3150838 (-)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain TCCC 11148
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3145059..3155838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9Y32_RS16225 (D9Y32_16255)	fliH	3145100..3145867 (-)	768	WP_016885763.1	flagellar assembly protein FliH	-
D9Y32_RS16230 (D9Y32_16260)	fliG	3145851..3146867 (-)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
D9Y32_RS16235 (D9Y32_16265)	fliF	3146881..3148482 (-)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
D9Y32_RS16240 (D9Y32_16270)	fliE	3148533..3148850 (-)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
D9Y32_RS16245 (D9Y32_16275)	flgC	3148864..3149316 (-)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
D9Y32_RS16250 (D9Y32_16280)	flgB	3149316..3149705 (-)	390	WP_025804533.1	flagellar basal body rod protein FlgB	-
D9Y32_RS16255 (D9Y32_16285)	codY	3150059..3150838 (-)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
D9Y32_RS16260 (D9Y32_16290)	hslU	3150877..3152280 (-)	1404	WP_003181754.1	HslU--HslV peptidase ATPase subunit	-
D9Y32_RS16265 (D9Y32_16295)	hslV	3152297..3152842 (-)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
D9Y32_RS16270 (D9Y32_16300)	xerC	3152856..3153770 (-)	915	WP_003181750.1	tyrosine recombinase XerC	-
D9Y32_RS16275 (D9Y32_16305)	trmFO	3153837..3155141 (-)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=322739 D9Y32_RS16255 WP_003181756.1 3150059..3150838(-) (codY) [Bacillus licheniformis strain TCCC 11148]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=322739 D9Y32_RS16255 WP_003181756.1 3150059..3150838(-) (codY) [Bacillus licheniformis strain TCCC 11148]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467